scicast is a python utility that automates many of the repetitive steps of analyzing single cell sequencing data.
-k-means clustering to identify clusters
-Clustering and subclustering of data to identify ‘stable’ sets of cells.
-Statistical testing to identify top genes that indentify stable cluster.
-Correlation search and analysis to identify gene networks driving cluster identity.
-Outputs both plots for visualization (PCA and heatmap) cell and gene lists that can be used to refine analysis.
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Release files for scicast 0.8.27
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scicast-0.8.27.tar.gz | 31.3 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| scicast-0.8.27-py3.6.egg | Legacy Egg format | - | - | Details |
| scicast-0.8.27-py3-none-any.whl | Python 3 | none | any | Details |
| scicast-0.8.27-py2.7.egg | Legacy Egg format | - | - | Details |
| scicast-0.8.27-py2-none-any.whl | Python 2 | none | any | Details |
Total release size: 287.0 kB
Release files / scicast-0.8.27.tar.gz
| Download URL | scicast-0.8.27.tar.gz |
|---|---|
| Size | 31.3 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / scicast-0.8.27-py3.6.egg
| Download URL | scicast-0.8.27-py3.6.egg |
|---|---|
| Size | 89.0 kB |
| Tags | Egg |
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Release files / scicast-0.8.27-py3-none-any.whl
| Download URL | scicast-0.8.27-py3-none-any.whl |
|---|---|
| Size | 38.8 kB |
| Tags | Python 3 |
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Release files / scicast-0.8.27-py2.7.egg
| Download URL | scicast-0.8.27-py2.7.egg |
|---|---|
| Size | 89.1 kB |
| Tags | Egg |
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Release files / scicast-0.8.27-py2-none-any.whl
| Download URL | scicast-0.8.27-py2-none-any.whl |
|---|---|
| Size | 38.8 kB |
| Tags | Python 2 |
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SHA-256 checksum How to use checksums |
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