scikit-fallback 0.2.0.post1

Efficient and reliable machine learning with a reject option and selectiveness

👁 Overview

scikit-fallback is a scikit-learn-compatible Python package for selective machine learning.

TL;DR

🔙 Augment your classification pipelines with skfb.estimators such as AnomalyFallbackClassifier and ThresholdFallbackClassifier to allow them to abstain from predictions in cases of uncertanty or anomaly.
📊 Inspect their performance by calculating combined, prediction-rejection metrics such as predict_reject_recall_score, or visualizing distributions of confidence scores with PairedHistogramDisplay, and other tools from skfb.metrics.
🎶 Combine your costly ensembles with RoutingClassifier or in ThresholdCascadeClassifierCV and other skfb.ensemble meta-estimators to streamline inference while elevating model performance.
📒See documentation, tutorials, and examples for more details and motivation.

🤔 Why scikit-fallback?

To fall back (on) means to retreat from making predictions, to rely on other tools for support. scikit-fallback offers functionality to enhance your machine learning solutions with selectiveness and a reject option.

Machine Learning with Rejections

To allow your classification pipelines to abstain from predictions, you can wrap them with a rejector. Training a rejector means both fitting your model and learning to accept or reject predictions. Evaluation of a rejector depends on fallback mode (inference with or without fallback labels) and measures the ability of the rejector to both accept correct predictions and reject ambiguous ones.

For example, skfb.estimators.ThresholdFallbackClassifierCV fits a base estimator and then finds the best confidence threshold s.t. predictions w/ maximum probability lower that this are rejected:

>>> import numpy as np
>>> from sklearn.linear_model import LogisticRegression
>>> from skfb.estimators import ThresholdFallbackClassifierCV
>>> X = np.array([[0, 0], [4, 4], [1, 1], [3, 3], [2.5, 2], [2., 2.5]])
>>> y = np.array([0, 1, 0, 1, 0, 1])
>>> # Train LogisticRegression and let it fallback based on confidence scores.
>>> rejector = ThresholdFallbackClassifierCV(
...     estimator=LogisticRegression(random_state=0),
...     thresholds=(0.5, 0.55, 0.6, 0.65),
...     ambiguity_threshold=0.0,
...     cv=2,
...     fallback_label=-1,
...     fallback_mode="store").fit(X, y)
>>> # If probability is lower than this, predict `fallback_label` = -1.
>>> rejector.threshold_
0.55
>>> # Make predictions and see which inputs were accepted or rejected.
>>> y_pred = rejector.predict(X)
>>> # If `fallback_mode` == `"store", always accept but also mask rejections.
>>> y_pred, y_pred.get_dense_fallback_mask()
(FBNDArray([0, 1, 0, 1, 1, 1]),
    array([False, False, False, False,  True, False]))
>>> # This allows calculation of combined metrics (e.g., predict-reject accuracy).
>>> rejector.score(X, y)
1.0
>>> # Otherwise, allow fallbacks
>>> rejector.set_params(fallback_mode="return").predict(X)
array([ 0,  1,  0,  1, -1,  1])
>>> # and calculate accuracy only on accepted samples,
>>> rejector.score(X, y)
1.0
>>> # or just switch off rejections and fallback to a plain LogisticRegression.
>>> rejector.set_params(fallback_mode="ignore").score(X, y)
0.8333333333333334

See Estimators for more examples of rejection meta-estimators and Combined Metrics for evaluation and inspection tools.

Dynamic Ensembling

While common ensembling methods such as voting and stacking aim to boost predictive performance, they also increase inference costs as a result of output aggregations. Alternatively, we could learn to choose which individual model or subset of models in an ensemble should make a decision, thereby reducing inference overhead while bargaining, or sometimes even improving, predictive performance.

For example, skfb.ensemble.ThresholdCascadeClassifierCV builds a cascade from a sequence of models arranged by their inference costs (and basically, by their performance - e.g., from weakest but fastest to strongest but slowest) and learns confidence thresholds that determine whether the current model in the sequence makes a prediction or defers to the next model based on its confidence score for a given input:

>>> from skfb.ensemble import ThresholdCascadeClassifierCV
>>> from sklearn.datasets import make_classification
>>> from sklearn.ensemble import HistGradientBoostingClassifier
>>> X, y = make_classification(
...     n_samples=1_000, n_features=100, n_redundant=97, class_sep=0.1, flip_y=0.05,
...     random_state=0)
>>> weak = HistGradientBoostingClassifier(max_iter=10, max_depth=2, random_state=0)
>>> okay = HistGradientBoostingClassifier(max_iter=20, max_depth=3, random_state=0)
>>> buff = HistGradientBoostingClassifier(max_iter=99, max_depth=4, random_state=0)
>>> # Train all models and learn thresholds per model s.t. if the current model's max
>>> # confidence score is lower, it defers the decision to the next in the cascade.
>>> cascading = ThresholdCascadeClassifierCV(
...     estimators=[weak, okay, buff],
...     costs=[1.1, 1.2, 1.99],
...     cv_thresholds=5,
...     cv=3,
...     scoring="accuracy",
...     return_earray=True,
...     response_method="predict_proba").fit(X, y)
>>> # Best thresholds for `weak` and `okay`
>>> # (`buff` will always predict if `weak` and `okay` fall back):
>>> cascading.best_thresholds_
array([0.6125, 0.8375])
>>> # If `return_earray` is True, predictions will be of type `skfb.core.FBNDArray`,
>>> # which store `acceptance_rate` w/ the ratios of accepted inputs per model.
>>> cascading.predict(X).acceptance_rates
array([0.659, 0.003, 0.338])

🏗 Installation

scikit-fallback requires:

• Python (>= 3.9,< 3.14)
• scikit-learn (>=1.0)
• numpy
• scipy
• matplotlib (>=3.0) (optional)

and along with the requirements can be installed via pip :

pip install scikit-fallback

---

Note: when using Python 3.9 w/ scikit-learn>=1.7, subclassing of BaseEstimator and scikit-learn mixins might result in runtime errors related to __sklearn_tags__. Also, if you have scikit-learn<=1.2, you will see warnings about the unavailability of nested or general parameter validation, which you can ignore.

🔗 Links

1. Documentation
2. Medium Series
3. Examples & Notebooks: examples/ and https://kaggle.com/sshadylov
4. Related Research:
   1. Hendrickx, K., Perini, L., Van der Plas, D. et al. Machine learning with a reject option: a survey. Mach Learn 113, 3073–3110 (2024).
   2. Wittawat Jitkrittum, Neha Gupta, Aditya K Menon, Harikrishna Narasimhan, Ankit Rawat, and Sanjiv Kumar. When does confidence-based cascade deferral suffice? NeurIPS, 36, 2024.
   3. And more (coming soon).