scipion-em-gautomatch 1.0.5b0

Plugin to use Gautomatch program within the Scipion framework

# Gautomatch plugin

This plugin provide a wrapper around [Gautomatch picker](https://www.mrc-lmb.cam.ac.uk/kzhang/).


## Installation

You will need to use [2.0](https://github.com/I2PC/scipion/releases/tag/v2.0) version of Scipion to be able to run these protocols. To install the plugin, you have two options:

a) Stable version
```
scipion installp -p scipion-em-gautomatch
```
b) Developer's version
* download repository
```
git clone https://github.com/scipion-em/scipion-em-gautomatch.git
```
* install
```
scipion installp -p path_to_scipion-em-gautomatch --devel
```

Gautomatch binaries will be installed automatically with the plugin, but you can also link an existing installation.
Default installation path assumed is `software/em/gautomatch-0.56`, if you want to change it, set *GAUTOMATCH_HOME* in `scipion.conf` file to the folder where the Gautomatch is installed. Depending on your CUDA version and GPU card compute capability you might want to change the default binary from `Gautomatch_v0.56_sm60_cu8.0` to a different one by explicitly setting *GAUTOMATCH* variable. If you need to use CUDA different from the one used during Scipion installation (defined by CUDA_LIB), you can add *GAUTOMATCH_CUDA_LIB* variable to the config file. Various binaries can be downloaded from the official Gautomatch website.

To check the installation, simply run the following Scipion test: `scipion test gautomatch.tests.test_protocols_gautomatch.TestGautomatchAutomaticPicking`

## Supported versions

0.53 and 0.56.

## Protocols

* [auto-picking](ProtGautomatch)

## References
1. K. Zhang. Unpublished.