Skip to main content
Avatar for scipion team from gravatar.com

scipion team

Username    scipion
Date joined   Joined

57 projects

scipion-em-jjsoft

Last released

jjsoft ready to use in scipion.

scipion-em-relion

Last released

Plugin to use Relion programs within the Scipion framework

scipion-em-pyseg

Last released

Scipion plugin pyseg.

scipion-em-reliontomo

Last released

Plugin to use Relion programs for tomography within the Scipion framework

scipion-em-phenix

Last released

PHENIX programs in Scipion. Warning: Install PHENIX v. 1-17

scipion-em-tomosegmemtv

Last released

Scipion plugin tomosegmemtv.

scipion-em-tomo

Last released

Plugin to use electron tomography software within the Scipion framework

scipion-em

Last released

This modules contains classes related with EM

scipion-app

Last released

Scipion application. For processing cryo electron microscopy images and hybrid modelling

scipion-pyworkflow

Last released

Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.

scipion-em-sphire

Last released

Cryolo picker, training and custom model importer. Janni denoising.

scipion-em-cryosparc2

Last released

Plugin to use cryoSPARC2 programs within the Scipion framework

scipion-em-resmap

Last released

Plugin to use ResMap program within the Scipion framework

scipion-em-sidesplitter

Last released

Plugin to use SIDESPLITTER program within the Scipion framework

scipion-em-motioncorr

Last released

Plugin to use motioncorr programs within the Scipion framework

scipion-em-cryoassess

Last released

Plugin to use cryoassess within the Scipion framework

scipion-em-chimera

Last released

Plugin to use chimera programs within the Scipion framework

scipion-em-cryodrgn

Last released

Plugin to use cryoDRGN within the Scipion framework

scipion-em-dynamo

Last released

Scipion plugin for dynamo.

scipion-em-emantomo

Last released

Plugin to use EMAN2 tomography programs within the Scipion framework

scipion-em-tomo3D

Last released

Tools for 3D visualization and manipulation of tomography data

scipion-em-deepfinder

Last released

Deepfinder plugin for scipion.

scipion-em-empiar

Last released

A Scipion plugin to make depositions to EMPIAR

scipion-em-xmipptomo

Last released

Scipion plugin to deal with xmipp tomography protocols.

scipion-em-novactf

Last released

novaCTF ready to use in scipion.

scipion-em-imod

Last released

Plugin to use some of the Tomography tools from IMOD in Scipion

scipion-em-cryocare

Last released

Plugin to use cryoCARE inside scipion.

scipion-em-xmipp

Last released

Plugin to use Xmipp programs within the Scipion framework (see https://scipion-em.github.io/docs/).

scipion-em-cryoef

Last released

Plugin to use Cryoef program within the Scipion framework

scipion-em-localrec

Last released

Localrec ready to use in scipion.

scipion-em-xmipp2

Last released

xmipp2 ready to use in scipion.

scipion-em-gautomatch

Last released

Plugin to use Gautomatch program within the Scipion framework

scipion-em-facilities

Last released

Plugin for Cryo-EM facilities to be used within Scipion framework

scipion-em-topaz

Last released

Topaz ready to use in scipion.

scipion-installer

Last released

Installs scipion 3 creating a virtual environment for it, for now only for developers.

scipion-em-eman2

Last released

Plugin to use EMAN2 programs within the Scipion framework

scipion-em-ccp4

Last released

CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher

scipion-em-pwperformance

Last released

Python module to provide performance analysis tools and storage of the metrics for a further comparison

scipion-em-cistem

Last released

Plugin to use cisTEM programs within the Scipion framework

scipion-em-gctf

Last released

Plugin to use Gctf program within the Scipion framework

scipion-em-atomstructutils

Last released

A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)

scipion-em-locscale

Last released

Plugin to use Locscale program within the Scipion framework

scipion-em-bsoft

Last released

Plugin to use Cryoef program within the Scipion framework

scipion-em-fsc3d

Last released

Plugin to use 3DFSC within the Scipion framework

scipion-em-imagic

Last released

Plugin to use IMAGIC programs within the Scipion framework

scipion-em-spider

Last released

Plugin to use Spider programs within the Scipion framework

scipion-em-emxlib

Last released

EMX_EXPORT ready to use in scipion.

scipion-em-atsas

Last released

Plugin to use ATSAS programs within the Scipion framework

scipion-em-appion

Last released

Plugin to use Appion Dogpicker within the Scipion framework

scipion-em-bamfordlab

Last released

Plugin to use Bamfordlab programs within the Scipion framework

scipion-em-bionotes

Last released

Scipion 3DBionotes plugin.

scipion-em-powerfit

Last released

Powerfit ready to use in Scipion.

scipion-em-nysbc

Last released

Plugin to use NYSBC programs within the Scipion framework

scipion-em-grigoriefflab

Last released

Grigoriefflab ready to use in scipion.

scipion-em-simple

Last released

Plugin to use Simple programs within the Scipion framework

scipion-em-esrf

Last released

Esrf's ISPyB monitor for Scipion

scipion-em-ispyb

Last released

ISPyB monitor for scipion

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page