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scipion team

Username    scipion
Date joined   Joined on

47 projects

scipion-em-spider

Last released on

Plugin to use Spider programs within the Scipion framework

scipion-em-cryoef

Last released on

Plugin to use Cryoef program within the Scipion framework

scipion-em-eman2

Last released on

Plugin to use EMAN2 programs within the Scipion framework

scipion-em-cryosparc2

Last released on

Plugin to use cryoSPARC2 programs within the Scipion framework

scipion-em-jjsoft

Last released on

jjsoft ready to use in scipion.

scipion-em-sphire

Last released on

Cryolo picker, training and custom model importer. Janni denoising.

scipion-installer

Last released on

Installs scipion 3 creating a virtual environment for it, for now only for developers.

scipion-em-imagic

Last released on

Plugin to use IMAGIC programs within the Scipion framework

scipion-em

Last released on

This modules contains classes related with EM

scipion-em-resmap

Last released on

Plugin to use ResMap program within the Scipion framework

scipion-em-cistem

Last released on

Plugin to use cisTEM programs within the Scipion framework

scipion-em-motioncorr

Last released on

Plugin to use motioncorr programs within the Scipion framework

scipion-em-imod

Last released on

Plugin to use some of the Tomography tools from IMOD in Scipion

scipion-em-tomo

Last released on

Plugin to use electron tomography software within the Scipion framework

scipion-em-dynamo

Last released on

Scipion plugin for dynamo.

scipion-pyworkflow

Last released on

Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.

scipion-em-facilities

Last released on

Plugin for Cryo-EM facilities to be used within Scipion framework

scipion-em-relion

Last released on

Plugin to use Relion programs within the Scipion framework

scipion-em-pyseg

Last released on

Scipion plugin pyseg.

scipion-app

Last released on

Scipion application. For processing cryo electron microscopy images and hybrid modelling

scipion-em-ccp4

Last released on

CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher

scipion-em-chimera

Last released on

Plugin to use chimera programs within the Scipion framework

scipion-em-xmipp

Last released on

Plugin to use Xmipp programs within the Scipion framework.

scipion-em-locscale

Last released on

Plugin to use Locscale program within the Scipion framework

scipion-em-topaz

Last released on

Topaz ready to use in scipion.

scipion-em-empiar

Last released on

A Scipion plugin to make depositions to EMPIAR

scipion-em-bsoft

Last released on

Bsoft ready to use in scipion.

scipion-em-bamfordlab

Last released on

Plugin to use Bamfordlab programs within the Scipion framework

scipion-em-appion

Last released on

Plugin to use Appion Dogpicker within the Scipion framework

scipion-em-atsas

Last released on

Plugin to use ATSAS programs within the Scipion framework

scipion-em-fsc3d

Last released on

Plugin to use 3DFSC within the Scipion framework

scipion-em-gautomatch

Last released on

Plugin to use Gautomatch program within the Scipion framework

scipion-em-gctf

Last released on

Plugin to use Gctf program within the Scipion framework

scipion-em-novactf

Last released on

novaCTF ready to use in scipion.

scipion-em-xmipptomo

Last released on

Scipion plugin to deal with xmipp tomography protocols.

scipion-em-phenix

Last released on

PHENIX programs in Scipion. Warning: Install PHENIX v. 1-13-2998 or 1-16-3549

scipion-em-atomstructutils

Last released on

A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)

scipion-em-xmipp2

Last released on

xmipp2 ready to use in scipion.

scipion-em-emxlib

Last released on

EMX_EXPORT ready to use in scipion.

scipion-em-localrec

Last released on

Localrec ready to use in scipion.

scipion-em-bionotes

Last released on

Scipion 3DBionotes plugin.

scipion-em-powerfit

Last released on

Powerfit ready to use in Scipion.

scipion-em-nysbc

Last released on

Plugin to use NYSBC programs within the Scipion framework

scipion-em-grigoriefflab

Last released on

Grigoriefflab ready to use in scipion.

scipion-em-simple

Last released on

Plugin to use Simple programs within the Scipion framework

scipion-em-esrf

Last released on

Esrf's ISPyB monitor for Scipion

scipion-em-ispyb

Last released on

ISPyB monitor for scipion

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