85 projects
scipion-em-cryosparc2
Plugin to use cryoSPARC2 programs within the Scipion framework
scipion-em-xmipp
Plugin to use Xmipp programs within the Scipion framework.
xmipp3-installer
Package to handle the installation of Xmipp3
scipion-em-membrain
Plugin to use membrain within the Scipion framework
scipion-em-dynamo
Plugin to use dynamo within the Scipion framework
scipion-em-tomo
Plugin to use tomo within the Scipion framework
scipion-em-warp
Plugin to use Warp within the Scipion framework
scipion-em-appion
Plugin to use Appion Dogpicker within the Scipion framework
scipion-em-tomosegmemtv
Plugin to use tomosegmemtv within the Scipion framework
scipion-em-tomo3d
Plugin to use tomo3d within the Scipion framework
scipion-em-tardis
Plugin to use tardis within the Scipion framework
scipion-em-sphire
Plugin to use Sphire programs within the Scipion framework
scipion-em-reliontomo
Plugin to use reliontomo within the Scipion framework
scipion-em-novactf
Plugin to use NovaCTF within the Scipion framework
scipion-em-imod
Plugin to use imod within the Scipion framework
scipion-em-gapstop
Plugin to use gapstop within the Scipion framework
scipion-em-fidder
Plugin to use fidder within the Scipion framework
scipion-em-emantomo
Plugin to use emantomo within the Scipion framework
scipion-em-deepfinder
Plugin to use deepfinder within the Scipion framework
scipion-em-cryocare
Plugin to use cryocare within the Scipion framework
scipion-em-aretomo
Plugin to use aretomo within the Scipion framework
scipion-pyworkflow
Workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy but generic by design to be applied to any domain.
scipion-em-carbonara
Plugin to run CARBonAra within the Scipion framework
scipion-em-opusdsd
Plugin to use Opusdsd programs within the Scipion framework
scipion-em-topaz
Plugin to use Topaz within the Scipion framework
scipion-em-recovar
Plugin to use RECOVAR within the Scipion framework
scipion-em-kiharalab
Scipion plugin that integrates Kiharalab's software.
scipion-em-facilities
Plugin to use Scipion in facilities
scipion-em-cryodrgn
Plugin to use cryodrgn programs within the Scipion framework
scipion-app
Scipion application. Plugin manager
scipion-em
Plugin extends Scipion framework towards cryo EM image processing
scipion-em-flexutils
Tools for 3D visualization and manipulation of flexibility data
scipion-em-emmivox
Scipion plugin emmivox
scipion-em-cryoten
Cryoten plugin for Scipion
scipion-em-repic
Plugin to use REPIC within the Scipion framework
scipion-em-miffi
Plugin to use miffi within the Scipion framework
metadata-viewer
Generic metadata viewer
tkColorPicker2
Color picker dialog for Tkinter forked from original
scipion-em-cryoef
Plugin to use cryoef programs within the Scipion framework
scipion-em-cistem
Plugin to use cisTEM programs within the Scipion framework
scipion-em-fsc3d
Plugin to use fsc3d within the Scipion framework
scipion-em-emready
EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning
scipion-em-gautomatch
Plugin to use Gautomatch within the Scipion framework
scipion-em-gctf
Plugin to use Gctf within the Scipion framework
scipion-em-tomotwin
Plugin to use TomoTwin within the Scipion framework
scipion-em-cryoassess
Plugin to use cryoassess programs within the Scipion framework
scipion-em-imagic
Plugin to use IMAGIC within the Scipion framework
scipion-em-susantomo
Plugin to use Susan programs within the Scipion framework
scipion-em-spider
Plugin to use Spider programs within the Scipion framework
scipion-em-sidesplitter
Plugin to use Sidesplitter within the Scipion framework
scipion-em-relion
Plugin to use Relion programs within the Scipion framework
scipion-em-xmipptomo
Scipion plugin to deal with xmipp tomography protocols.
scipion-em-tomoviz
Tools for 3D visualization and manipulation of tomography data
scipion-em-roodmus
Roodmus plugin for Scipion
scipion-em-motioncorr
Plugin to use motioncor programs within the Scipion framework
scipion-em-empiar
A Scipion plugin to make depositions to EMPIAR
scipion-em-locscale
Plugin to use Locscale program within the Scipion framework
scipion-installer
Installs scipion 3 creating a virtual environment for it anc creates a launcher.
scipion-em-chimera
Plugin to use chimera programs within the Scipion framework
scipion-em-xmippBase
Scipion pseudoplugin to deal with the shared xmipp protocols.
scipion-em-pyseg
Scipion plugin for PySeg
scipion-em-eman2
Plugin to use EMAN programs within the Scipion framework
scipion-em-modelangelo
Scipion plugin for modelangelo.
scipion-em-isonet
Scipion plugin isonet.
scipion-em-localrec
Localrec ready to use in scipion.
scipion-em-smartscope
Plugin to manage Smartscope from Scipion
scipion-em-ccp4
CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher
scipion-em-pwperformance
Python module to provide performance analysis tools and storage of the metrics for a further comparison
scipion-em-atsas
Plugin to use ATSAS programs within the Scipion framework
scipion-em-phenix
PHENIX programs in Scipion. Warning: Install PHENIX v. 1-17
scipion-em-spoc
Plugin to use SPOC programs within the Scipion framework
scipion-em-bsoft
Plugin to use Cryoef program within the Scipion framework
scipion-em-xlmtools
Plugin to use xlmtools-Tools programs within the Scipion framework
scipion-em-resmap
Plugin to use ResMap program within the Scipion framework
scipion-em-xmipp2
xmipp2 ready to use in scipion.
scipion-em-atomstructutils
A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)
scipion-em-emxlib
EMX_EXPORT ready to use in scipion.
scipion-em-bamfordlab
Plugin to use Bamfordlab programs within the Scipion framework
scipion-em-bionotes
Scipion 3DBionotes plugin.
scipion-em-powerfit
Powerfit ready to use in Scipion.
scipion-em-grigoriefflab
Grigoriefflab ready to use in scipion.
scipion-em-simple
Plugin to use Simple programs within the Scipion framework
scipion-em-esrf
Esrf's ISPyB monitor for Scipion
scipion-em-ispyb
ISPyB monitor for scipion
