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scipion team

Username    scipion
Date joined   Joined

74 projects

scipion-em-tomo

Last released

Plugin to use electron tomography software within the Scipion framework

scipion-em-xmipptomo

Last released

Scipion plugin to deal with xmipp tomography protocols.

scipion-app

Last released

Scipion application. For processing cryo electron microscopy images and hybrid modelling

scipion-em-fidder

Last released

Plugin to use fidder within the Scipion framework

scipion-em-tomosegmemtv

Last released

Scipion plugin for softare packages tomosegmemTV and membraneAnnotator.

scipion-em-dynamo

Last released

Plugin to use DYNAMO within the Scipion framework

scipion-em-tomo3d

Last released

tomo3d and other software at https://sites.google.com/site/3demimageprocessing/Home ready to use in scipion.

scipion-em-reliontomo

Last released

Plugin to use reliontomo within the Scipion framework

scipion-em-aretomo

Last released

Plugin to use AreTomo program within the Scipion framework

scipion-em-imod

Last released

Plugin to use some of the Tomography tools from IMOD in Scipion

scipion-em-warp

Last released

Plugin to use Warp within the Scipion framework

scipion-em-tomoviz

Last released

Tools for 3D visualization and manipulation of tomography data

scipion-em-gctf

Last released

Plugin to use Gctf program within the Scipion framework

scipion-em-cryodrgn

Last released

Plugin to use cryoDRGN within the Scipion framework

metadata-viewer

Last released

Generic metadata viewer

scipion-em-roodmus

Last released

Roodmus plugin for Scipion

scipion-em-relion

Last released

Plugin to use Relion programs within the Scipion framework

scipion-pyworkflow

Last released

Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.

scipion-em-motioncorr

Last released

Plugin to use motioncor programs within the Scipion framework

scipion-em-sphire

Last released

Plugin to use Sphire programs within the Scipion framework

scipion-em

Last released

This modules contains classes related with EM

scipion-em-cistem

Last released

Plugin to use cisTEM programs within the Scipion framework

scipion-em-empiar

Last released

A Scipion plugin to make depositions to EMPIAR

scipion-em-tomotwin

Last released

Plugin to use TomoTwin within the Scipion framework

scipion-em-novactf

Last released

Plugin to use NovaCTF in Scipion

scipion-em-cryosparc2

Last released

Plugin to use cryoSPARC2 programs within the Scipion framework

scipion-em-locscale

Last released

Plugin to use Locscale program within the Scipion framework

scipion-em-emready

Last released

EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning

scipion-em-emantomo

Last released

Plugin to use EMAN2 tomography programs within the Scipion framework

scipion-em-flexutils

Last released

Tools for 3D visualization and manipulation of flexibility data

scipion-em-kiharalab

Last released

Scipion plugin in order to use ther kiharalab software

scipion-installer

Last released

Installs scipion 3 creating a virtual environment for it anc creates a launcher.

scipion-em-chimera

Last released

Plugin to use chimera programs within the Scipion framework

scipion-em-gautomatch

Last released

Plugin to use Gautomatch program within the Scipion framework

scipion-em-xmippBase

Last released

Scipion pseudoplugin to deal with the shared xmipp protocols.

scipion-em-pyseg

Last released

Scipion plugin for PySeg

scipion-em-xmipp

Last released

Plugin to use Xmipp programs within the Scipion framework (see https://scipion-em.github.io/docs/).

scipion-em-facilities

Last released

Plugin for Cryo-EM facilities to be used within Scipion framework

scipion-em-eman2

Last released

Plugin to use EMAN programs within the Scipion framework

scipion-em-modelangelo

Last released

Scipion plugin for modelangelo.

scipion-em-cryocare

Last released

Plugin to use cryoCARE inside scipion.

scipion-em-susantomo

Last released

Plugin to use SUSAN within the Scipion framework

scipion-em-isonet

Last released

Scipion plugin isonet.

scipion-em-deepfinder

Last released

Deepfinder plugin for scipion.

scipion-em-localrec

Last released

Localrec ready to use in scipion.

scipion-em-cryoef

Last released

Plugin to use Cryoef program within the Scipion framework

scipion-em-cryoassess

Last released

Plugin to use cryoassess within the Scipion framework

scipion-em-fsc3d

Last released

Plugin to use 3DFSC within the Scipion framework

scipion-em-imagic

Last released

Plugin to use IMAGIC programs within the Scipion framework

scipion-em-sidesplitter

Last released

Plugin to use SIDESPLITTER program within the Scipion framework

scipion-em-spider

Last released

Plugin to use Spider programs within the Scipion framework

scipion-em-smartscope

Last released

Plugin to manage Smartscope from Scipion

scipion-em-repic

Last released

Scipion plugin for REPIC.

scipion-em-ccp4

Last released

CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher

scipion-em-topaz

Last released

Topaz ready to use in scipion.

scipion-em-pwperformance

Last released

Python module to provide performance analysis tools and storage of the metrics for a further comparison

scipion-em-atsas

Last released

Plugin to use ATSAS programs within the Scipion framework

scipion-em-phenix

Last released

PHENIX programs in Scipion. Warning: Install PHENIX v. 1-17

scipion-em-spoc

Last released

Plugin to use SPOC programs within the Scipion framework

scipion-em-bsoft

Last released

Plugin to use Cryoef program within the Scipion framework

scipion-em-xlmtools

Last released

Plugin to use xlmtools-Tools programs within the Scipion framework

scipion-em-resmap

Last released

Plugin to use ResMap program within the Scipion framework

scipion-em-xmipp2

Last released

xmipp2 ready to use in scipion.

scipion-em-atomstructutils

Last released

A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)

scipion-em-emxlib

Last released

EMX_EXPORT ready to use in scipion.

scipion-em-appion

Last released

Plugin to use Appion Dogpicker within the Scipion framework

scipion-em-bamfordlab

Last released

Plugin to use Bamfordlab programs within the Scipion framework

scipion-em-bionotes

Last released

Scipion 3DBionotes plugin.

scipion-em-powerfit

Last released

Powerfit ready to use in Scipion.

scipion-em-nysbc

Last released

Plugin to use NYSBC programs within the Scipion framework

scipion-em-grigoriefflab

Last released

Grigoriefflab ready to use in scipion.

scipion-em-simple

Last released

Plugin to use Simple programs within the Scipion framework

scipion-em-esrf

Last released

Esrf's ISPyB monitor for Scipion

scipion-em-ispyb

Last released

ISPyB monitor for scipion

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