Resmap plugin
This plugin provides a wrapper for ResMap program.
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-resmapDeveloper’s version
download repository
git clone https://github.com/scipion-em/scipion-em-resmap.gitinstall
scipion installp -p path_to_scipion-em-resmap --devel
ResMap binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/resmap-1.95, if you want to change it, set RESMAP_HOME in scipion.conf file pointing to the folder where the ResMap is installed. ResMap binary (default ResMap-1.95-cuda-Centos7x64) and CUDA lib module (default ResMap_krnl-cuda-V8.0.61-sm60_gpu.so) can be set by RESMAP and RESMAP_GPU_LIB vars, respectively. You also might need to set RESMAP_CUDA_LIB in the config file pointing to the correct location of system CUDA libraries.
To check the installation, simply run the following Scipion test: scipion test resmap.tests.test_protocols_resmap.TestResMap
A complete list of tests can also be seen by executing scipion test --show --grep resmap
Supported versions
1.95
Protocols
local resolution
References
Kucukelbir A. et al. (2014) Quantifying the local resolution of cryo-EM density maps. Nature Methods 11, 63-65.
Release files for scipion-em-resmap 3.0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| scipion-em-resmap-3.0.3.tar.gz | 37.0 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_em_resmap-3.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 75.5 kB
Release files / scipion-em-resmap-3.0.3.tar.gz
| Download URL | scipion-em-resmap-3.0.3.tar.gz |
|---|---|
| Size | 37.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.62.1 CPython/3.9.6
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Release files / scipion_em_resmap-3.0.3-py3-none-any.whl
| Download URL | scipion_em_resmap-3.0.3-py3-none-any.whl |
|---|---|
| Size | 38.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.62.1 CPython/3.9.6
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Security for scipion-em-resmap 3.0.3
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