Plugin to use ResMap program within the Scipion framework
Project description
This plugin provides a wrapper for ResMap program.
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-resmap
Developer’s version
download repository
git clone https://github.com/scipion-em/scipion-em-resmap.git
install
scipion installp -p path_to_scipion-em-resmap --devel
ResMap binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/resmap-1.95, if you want to change it, set RESMAP_HOME in scipion.conf file pointing to the folder where the ResMap is installed. ResMap binary (default ResMap-1.95-cuda-Centos7x64) and CUDA lib module (default ResMap_krnl-cuda-V8.0.61-sm60_gpu.so) can be set by RESMAP and RESMAP_GPU_LIB vars, respectively. You also might need to set RESMAP_CUDA_LIB in the config file pointing to the correct location of system CUDA libraries.
To check the installation, simply run the following Scipion test: scipion test resmap.tests.test_protocols_resmap.TestResMap
A complete list of tests can also be seen by executing scipion test --show --grep resmap
Supported versions
1.95
Protocols
local resolution
References
Kucukelbir A. et al. (2014) Quantifying the local resolution of cryo-EM density maps. Nature Methods 11, 63-65.
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