IsoNet plugin
This plugin allows to use IsoNet programs within the Scipion framework
IsoNet stand for ISOtropic reconstruction of Electron Tomography. It train deep neural networks to reconstruct meaningful contents in the missing wedge for electron tomography increase signal-to-noise ratio using the information learned from the original tomogram. The software requires tomograms as input. Observing at about 30A resolutions, the IsoNet generated tomograms are largely isotropic.
You will need to use 3.0.0 version of Scipion to run these protocols.
Protocols
Isotropic Reconstruction: Isotropic Reconstruction of Electron Tomograms with Deep Learning
Latest plugin version
v3.0.0
new : First plugin version
Installing the plugin
In order to install the plugin follow these instructions:
Install the plugin
scipion installp -p scipion-em-isonetor through the plugin manager by launching Scipion and following Configuration >> Plugins
To install in development mode
Clone or download the plugin repository
git clone https://github.com/scipion-em/scipion-em-isonet.gitInstall the plugin in developer mode.
scipion installp -p local/path/to/scipion-em-isonet --develBuildbot status
Status devel version:
Status production version:
IsoNet References
The publication associated with IsoNet can be found here:
1 maintainer
Metadata
1 maintainer
Release files for scipion-em-isonet 3.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scipion-em-isonet-3.0.1.tar.gz | 199.2 kB | Details |
Release files / scipion-em-isonet-3.0.1.tar.gz
| Download URL | scipion-em-isonet-3.0.1.tar.gz |
|---|---|
| Size | 199.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
b5553cd15e80dd38613e3d71cec182cfe70de3e9cede9785f6d0486fe0c0cadd
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BLAKE2b-256 checksum How to use checksums |
a6dc5fb3ebc3ed69f350174322c9e2218c4443fc855d2b6169360b003bc67515
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| Uploaded via |
twine/4.0.2 CPython/3.8.18
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