Roodmus plugin for Scipion
Plugin to run Roodmus software in Scipion.
All the information regarding the software is avalaible in the following paper.
Roodmus is a benchmarking tool that allows for the analysis of cryo-EM reconstruction methods using ground truth data. Roodmus uses a molecular dynamics (MD) trajectory as input and samples this trajectory to generate a data set with encoded heterogeneity as defined by the MD. Synthetic micrographs are generated in the package using the Parakeet simulation software.
Plugin installation
There are two different ways to install Roodmus plugin:
Production mode
scipion3 installp -p scipion-em-roodmusDevelopment mode
git clone https://github.com/scipion-em/scipion-em-roodmus.git
scipion3 installp -p scipion-em-roodmus --devel1 maintainer
Metadata
1 maintainer
Release files for scipion-em-roodmus 1.0.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scipion-em-roodmus-1.0.4.tar.gz | 34.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_em_roodmus-1.0.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 72.9 kB
Release files / scipion-em-roodmus-1.0.4.tar.gz
| Download URL | scipion-em-roodmus-1.0.4.tar.gz |
|---|---|
| Size | 34.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.10.15
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Release files / scipion_em_roodmus-1.0.4-py3-none-any.whl
| Download URL | scipion_em_roodmus-1.0.4-py3-none-any.whl |
|---|---|
| Size | 38.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.10.15
|
