scipion-em-smartscope 3.0.1

Installation

You will need to install Smartscope previous the plugin installation Follow the steps to install it with Docker (Installation with Anaconda/Miniconda is not abailable yet) Developer’s version:

• Download repository

git clone -b devel https://github.com/scipion-em/scipion-em-smartscope.git

• Install

scipion installp -p /path/to/scipion-em-smartscope --devel

Configuration

• Smartscope provide a token when the installation finish and you are logged, visit here for more details. Please add the token in the scipion.conf file as SMARTSCOPE_TOKEN = …XXXfeb270a1bc4120b1XXXX…

• Smartscope will save the data (not the acquisition managed by SerialEM) in the path you decided in the installation procedure. Please, provide that information on the scipion.conf as SMARTSCOPE_DATA_SESSION_PATH = path/smartscope/save/data

• Add the url to acces to the Smartscope web, by default is http://localhost:48000/ but if you change the url or the port please add the new url in the scipion.conf as SMARTSCOPE_LOCALHOST = http://localhost:48000/

Once you edit the scipion.conf please save it and run scipion config

Protocols

• Smartscope connection

• Provide calculations

• Smartscope feedback