SPOC plugin
This plugin provide wrappers around several programs of SPOC.
stable: |
devel: | |
Installation
You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version (not avalaible yet)
scipion installp -p scipion-em-spocDeveloper’s version
download repository
git clone https://github.com/scipion-em/scipion-em-spoc.gitinstall
scipion installp -p path_to_scipion-em-spoc --devel
SPOC binaries will be installed automatically with the plugin.
Default installation path assumed is software/em/spoc-1.0, if you want to change it, set SPOC_HOME in scipion.conf file pointing to the folder where the SPOC is installed.
To check the installation, simply run one of the following Scipion tests:
scipion3 tests spoc.tests.test_protocols_spoc.TestFscFdrControlA complete list of tests can also be seen by executing scipion test --show --grep spoc
Supported versions
1.0
Protocols
FSC_FDR Control
References
Beckers, M., Jakobi, A. J., Sachse, C. (2019) Thresholding of cryo-EM density maps by false discovery rate control. IUCr Journal 6 (1)
1 maintainer
Metadata
1 maintainer
Release files for scipion-em-spoc 1.0.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scipion-em-spoc-1.0.6.tar.gz | 48.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_em_spoc-1.0.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 103.5 kB
Release files / scipion-em-spoc-1.0.6.tar.gz
| Download URL | scipion-em-spoc-1.0.6.tar.gz |
|---|---|
| Size | 48.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.0 CPython/3.8.12
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Release files / scipion_em_spoc-1.0.6-py3-none-any.whl
| Download URL | scipion_em_spoc-1.0.6-py3-none-any.whl |
|---|---|
| Size | 54.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
3fedd1b3a2003aebcabcaa57c44ebb00bb7b89032fe507c409c6fddb41f2b4f0
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BLAKE2b-256 checksum How to use checksums |
a3d1e6ea7794cb6b58fbd52c65c919688761939787396a29e99e437e6f96e9bf
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.0 CPython/3.8.12
|
