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Plugin to use Cryoef program within the Scipion framework

Project description

This plugin provide a wrapper around cryoEF program.

build status

Installation

You will need to use 2.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:

  1. Stable version
scipion installp -p scipion-em-cryoef
  1. Developer’s version

    • download repository
    git clone https://github.com/scipion-em/scipion-em-cryoef.git
    
    • install
    scipion installp -p path_to_scipion-em-cryoef --devel
    

CryoEF binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/cryoEF-1.1.0, if you want to change it, set CRYOEF_HOME in scipion.conf` file to the folder where the cryoEF is installed. To check the installation, simply run the following Scipion test:

scipion test cryoef.tests.test_protocols_cryoef.TestCryoEF

Supported versions

1.1.0

Protocols

  • orientation analysis

Detailed manual can be found in software/em/cryoEF-1.1.0/cryoEF_v1.1.0_manual.pdf

Project details


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Filename, size & hash SHA256 hash help File type Python version Upload date
scipion-em-cryoef-1.0.5.tar.gz (24.1 kB) Copy SHA256 hash SHA256 Source None

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