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Plugin to use Cryoef program within the Scipion framework

Project description

This plugin provide a wrapper around cryoEF program.

build status


You will need to use 2.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:

  1. Stable version
scipion installp -p scipion-em-cryoef
  1. Developer’s version

    • download repository
    git clone
    • install
    scipion installp -p path_to_scipion-em-cryoef --devel

CryoEF binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/cryoEF-1.1.0, if you want to change it, set CRYOEF_HOME in scipion.conf` file to the folder where the cryoEF is installed. To check the installation, simply run the following Scipion test:

scipion test cryoef.tests.test_protocols_cryoef.TestCryoEF

Supported versions



  • orientation analysis

Detailed manual can be found in software/em/cryoEF-1.1.0/cryoEF_v1.1.0_manual.pdf

Project details

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Filename, size & hash SHA256 hash help File type Python version Upload date
scipion-em-cryoef-1.0.5.tar.gz (24.1 kB) Copy SHA256 hash SHA256 Source None

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