scipion-em-cryoef

This plugin provides a wrapper for cryoEF program.

Installation

You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:

Stable version

scipion installp -p scipion-em-cryoef

Developer’s version

download repository

git clone -b devel https://github.com/scipion-em/scipion-em-cryoef.git

install

scipion installp -p /path/to/scipion-em-cryoef --devel

CryoEF binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/cryoEF-1.1.0, if you want to change it, set CRYOEF_HOME in scipion.conf` file to the folder where the cryoEF is installed. To check the installation, simply run the following Scipion test:

scipion test cryoef.tests.test_protocols_cryoef.TestCryoEF

Supported versions

1.1.0

Protocols

orientation analysis

Detailed manual can be found in software/em/cryoEF-1.1.0/cryoEF_v1.1.0_manual.pdf

References

1. Naydenova, K and Russo, CJ “Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy” Nature Communications (2017).

Metadata

Release files for scipion-em-cryoef 3.0.16

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for scipion-em-cryoef 3.0.16
File	Size	Uploaded
scipion_em_cryoef-3.0.16.tar.gz	24.5 kB	May 1, 2025	Details

Built distribution (wheel)

Table of built distributions (wheels) for scipion-em-cryoef 3.0.16
File	Interpreter	ABI	Platform	Reset
scipion_em_cryoef-3.0.16-py3-none-any.whl 30.2 kB May 1, 2025	Python 3	none	any	Details

Total release size: 54.6 kB

Release files / scipion_em_cryoef-3.0.16.tar.gz

Download URL	scipion_em_cryoef-3.0.16.tar.gz
Size	24.5 kB
Tags	Source
SHA-256 checksum How to use checksums	`b3005f48cda8d09c3afdc79ed05a88459c5856083a129b00a7d36fea922d443a`
BLAKE2b-256 checksum How to use checksums	`8f74584afb131332f384a17f44486462e4182830a06d73c0192e1a00a09da26d`
Upload date	May 1, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.8.18`

Release files / scipion_em_cryoef-3.0.16-py3-none-any.whl

Download URL	scipion_em_cryoef-3.0.16-py3-none-any.whl
Size	30.2 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`536b60f48b484e73c59bdf215eb64e8bc9ccb606087539ce67806b81607515fc`
BLAKE2b-256 checksum How to use checksums	`be6501ad58ec0551f643cf64e15d081fceea4ff8939783547799099f53b434d2`
Upload date	May 1, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.8.18`