This plugin provides a wrapper around the program GAPSTOP_TM (GPU-Accelerated Python STOPgap for Template Matching) to use it within Scipion framework. The library cryoCAT is also integrated as part of the plugin.
Installation
You will need to use 3.0 version of Scipion to run these protocols. To install the plugin, you have two options:
Stable version:
scipion3 installp -p scipion-em-gapstopDeveloper’s version
download the repository from github:
git clone -b devel https://github.com/scipion-em/scipion-em-gapstop.gitinstall:
scipion3 installp -p /path/to/scipion-em-gapstop --devel
To check the installation, simply run the following Scipion test for the plugin:
scipion3 tests gapstop.tests.tests_gapstop.Testgapstop
To check the installation, simply run one of the tests. A complete list of tests can be displayed by executing
scipion3 tests --grep gapstop --show
Protocols
Template matching : Generate score and angular maps from the introduced tomograms from which the coordinates can be extracted with the protocol ‘Extract coordinates’.
Extract coordinates : Extracts coordinates from score maps produced by template matching with GAPSTOP(TM).
Latest plugin versions
If you want to check the latest version and release history go to CHANGES
References
Cruz-León, S., Majtner, T., Hoffmann, P.C. et al. Nat Commun 15, 3992 (2024).
1 maintainer
Metadata
1 maintainer
Release files for scipion-em-gapstop 3.3.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scipion_em_gapstop-3.3.0.tar.gz | 173.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_em_gapstop-3.3.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 351.3 kB
Release files / scipion_em_gapstop-3.3.0.tar.gz
| Download URL | scipion_em_gapstop-3.3.0.tar.gz |
|---|---|
| Size | 173.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/6.1.0 CPython/3.8.18
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Release files / scipion_em_gapstop-3.3.0-py3-none-any.whl
| Download URL | scipion_em_gapstop-3.3.0-py3-none-any.whl |
|---|---|
| Size | 177.5 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.8.18
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