scipion-em-cryoten 1.0.0

Configuration variables

There are some variables related to the cryoten installation. If you have installed cryoten within Scipion, you may define CRYOTEN_ENV_ACTIVATION for specifying how to activate the environment. This variable with be used together with the general conda activation to generate the final cryoten command. For example:

CRYOTEN_ENV_ACTIVATION = conda activate cryoten_env

If this variable is not defined, a default value will be provided that will work if the latest version is installed.

If cryoten is installed already outside Scipion, one could define MODEL_ANGELO_ACTIVATION. This variable will provide an activation (or load) command that can be anything and the Scipion conda activate will not be prepended. For example (loading cryoten as a module):

MODEL_ANGELO_ACTIVATION = module load cryoten/main

If you need to use CUDA different from the one used during Scipion installation (defined by CUDA_LIB), you can add MODEL_ANGELO_CUDA_LIB variable to the config file.