This plugin provides wrappers for several programs of NovaCTF software suite.
Installation
You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
Stable version
scipion installp -p scipion-em-novactfDeveloper’s version
download repository
git clone -b devel https://github.com/scipion-em/scipion-em-novactf.gitinstall
scipion installp -p /path/to/scipion-em-novactf --devel
NovaCTF binaries will be downloaded and installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/novactf-master, if you want to change it, set NOVACTF_HOME in scipion.conf file to the folder where the NovaCTF is installed.
To check the installation, simply run the test below:
scipion3 tests novactf.tests.test_protocols_novactf.TestNovaCtfReconstructionWorkflow
Supported versions
master (8 Nov 2018)
Protocols
compute defocus array
3D CTF correction and reconstruction
References
Beata Turoňová and Florian K.M. Schur and William Wan and John A.G. Briggs. Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å. Journal of Structural Biology 199 (3), p. 187-195, 2017. doi: https://doi.org/10.1016/j.jsb.2017.07.007
1 maintainer
Metadata
1 maintainer
Release files for scipion-em-novactf 4.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| scipion_em_novactf-4.0.1.tar.gz | 28.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| scipion_em_novactf-4.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 58.8 kB
Release files / scipion_em_novactf-4.0.1.tar.gz
| Download URL | scipion_em_novactf-4.0.1.tar.gz |
|---|---|
| Size | 28.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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Release files / scipion_em_novactf-4.0.1-py3-none-any.whl
| Download URL | scipion_em_novactf-4.0.1-py3-none-any.whl |
|---|---|
| Size | 30.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.8.18
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