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Scipion plugin for CryoEM tools developed at SciLifeLab

Project description

Scipion plugin for CryoEM tools developed at SciLifeLab.


You will need to use Scipion 2.0 to be able to run these protocols. To install the plugin, you have two options:

  1. Stable version

    scipion installp -p scipion-em-sll
  2. Developer’s version

    • download repository
    git clone
    • install
    scipion installp -p path_to_scipion-em-sll --devel

To check the installation, simply run one of the following Scipion tests:

scipion test gctf.tests.test_protocols_gctf.TestGctfRefine
scipion test gctf.tests.test_protocols_gctf.TestGctf


Protocol Description
filter classes CC Simple protocol to select ‘good’ classes based on cross-correlation and the number of particles assigned.
filter CTF If we took the bones out, it wouldn’t be crunchy, now would it?


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