scipion-em-sll 0.0.1

Scipion plugin for CryoEM tools developed at SciLifeLab

Scipion plugin for CryoEM tools developed at SciLifeLab.

Installation

You will need to use Scipion 2.0 to be able to run these protocols. To install the plugin, you have two options:

1. Stable version

   scipion installp -p scipion-em-sll

2. Developer’s version

   • download repository

   git clone https://github.com/scipion-em/scipion-em-sll.git

   • install

   scipion installp -p path_to_scipion-em-sll --devel

To check the installation, simply run one of the following Scipion tests:

scipion test gctf.tests.test_protocols_gctf.TestGctfRefine
scipion test gctf.tests.test_protocols_gctf.TestGctf

Protocols

Protocol	Description
filter classes CC	Simple protocol to select ‘good’ classes based on cross-correlation and the number of particles assigned.
filter CTF	If we took the bones out, it wouldn’t be crunchy, now would it?

References

• None yet