scistack

Project & environment tooling for the SciStack scientific pipeline framework.

scistack is the top-level package that ties the SciStack layers together for end users who are building and publishing scientific projects. It provides:

scistack.uv_wrapper — thin Python wrapper around the uv CLI for lockfile management (sync, add, remove, read_lockfile, is_lockfile_stale).
scistack.user_config — user-global configuration in ~/.scistack/config.toml, including tapped package indexes.
scistack.project — project scaffolder that creates the standard SciStack project layout (src/{name}/, .scistack/, pyproject.toml, uv.lock, {name}.duckdb).
scistack CLI — scistack project new and related commands.

Higher-level abstractions (Variables, pipeline functions, for-each execution) live in scidb. The GUI lives in scistack-gui. scistack is the glue layer that turns a scidb-using script into a reproducible project.

See docs/claude/project-library-structure.md for the full design and .claude/project-library-structure.md for the implementation plan.

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