This release is a pre-release and may not be stable for production use.
sciunit is a command-line tool that answers the call for a reusable research object that containerizes and stores applications simply and efficiently, facilitates sharing and collaboration, and eases the task of executing, understanding, and building on shared work.
Installing
[ Note This section introduces the binary distributions of sciunit. –end note ]
Requires: pip>=8.1.1, glibc>=2.17, python2.7 with headers and compiler
Platform: amd64-pc-linux-gnu
Ensure that ~/.local/bin is in your PATH environment variable, and then, run
pip install --user sciunit2
Add --upgrade to the command line arguments to upgrade an existing sciunit installation.
Verify the installation with
sciunit --version
In the following per-distro instructions, if you see a command-line in the form of
export PATH=~/.local/bin:$PATH
, it merely means that you will need the aforementioned binary path in PATH before proceeding; normally you should adjust it according to your login shell and write it to a shell configuration such as ~/.profile.
Ubuntu 16.04
sudo apt update sudo apt install python-dev python-pip pip install --user sciunit2
Ubuntu 14.04
sudo apt update sudo apt install python-dev python-pip pip install --user -U pip export PATH=~/.local/bin:$PATH pip install --user sciunit2
Arch Linux
sudo pacman -S python2-pip export PATH=~/.local/bin:$PATH pip2 install --user sciunit2
Fedora 26
sudo dnf install python2-pip python2-devel gcc redhat-rpm-config pip install --user sciunit2
CentOS 7
sudo yum install -y epel-release sudo yum install python2-pip python-devel gcc pip install --user sciunit2
RHEL 7
sudo yum install -y https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm sudo yum install python2-pip python-devel gcc pip install --user sciunit2
Debian 9
sudo apt update sudo apt install python-dev python-pip export PATH=~/.local/bin:$PATH pip install --user sciunit2
Debian 8
sudo apt update sudo apt install python-dev python-pip pip install --user -U pip export PATH=~/.local/bin:$PATH pip install --user sciunit2
OpenSUSE 42
Note that OpenSUSE defaults user-binary path to ~/bin rather than ~/.local/bin, so you may want to symlink one to the other.
sudo zypper install python-pip python-devel gcc pip install --user -U pip export PATH=~/.local/bin:$PATH pip install --user sciunit2
Known Issues
If your environment is not listed, or you missed some prerequisites before issuing pip, you may observe the following error when running sciunit:
ImportError: No module named _bsddb
Fortunately, there are more than one ways to fulfill this dependency. Try to find and install a package often named “python-bsddb” or “python-bsddb3” with your system package manager. In Anaconda, you will need a port called “bsddb.”
Using
Checkout our tutorial and manpage. The manpage is available as
man sciunit
after a successful installation.
Release files for sciunit2 0.2.post4.dev128624984
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| sciunit2-0.2.post4.dev128624984-py2-none-manylinux1_x86_64.whl | Python 2 | none | Linux glibc 2.5+ x86-64 | Details |
Release files / sciunit2-0.2.post4.dev128624984-py2-none-manylinux1_x86_64.whl
| Download URL | sciunit2-0.2.post4.dev128624984-py2-none-manylinux1_x86_64.whl |
|---|---|
| Size | 666.9 kB |
| Tags | Linux glibc 2.5+ x86-64 Python 2 |
|
SHA-256 checksum How to use checksums |
787ebdbe57e49908e173fb442b927221ba9db098561ce8ad656e20672202da0d
|
|
BLAKE2b-256 checksum How to use checksums |
23f183dc671c84332680e2c45846d37399df8350cce5c38dc661790027cbc577
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
