SCIV

SCIV: Unveiling the pivotal cell types involved in variant function regulation at a single-cell resolution

overview.png

We propose SCIV, a method integrating cell cluster-type correction with a weighted seed-based random walk. By eliminating substantial noise from seed cells, SCIV enables the efficient enrichment of causal variants within cells of interest.

SCIV tutorial: https://sciv.readthedocs.io/en/latest/

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (0.0.196)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for yuzhengmin from gravatar.com yuzhengmin

Credits

Author: Zheng-Min Yu

License

MIT License (Copyright (c) 2024 Zheng-Min Yu Permission is hereby granted, free of charge, to any person obtaini...)

Requires

Python >=3.10

Tags

Causal variant Fine-mapping SCIV Single-cell epiomics Trait scATAC-seq

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

sciv-0.0.175.tar.gz (117.7 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

sciv-0.0.175-py3-none-any.whl (124.5 kB view details)

Uploaded Python 3

File details

Details for the file sciv-0.0.175.tar.gz.

File metadata

  • Download URL: sciv-0.0.175.tar.gz
  • Upload date:
  • Size: 117.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.10.0

File hashes

Hashes for sciv-0.0.175.tar.gz
Algorithm Hash digest
SHA256 fd0f66720dfbb44acaf0d4e59ee306c06a0169f7a2bb1096d392af9ef3abbb42
MD5 99bb56a6f6aaedd8e08a46b5a0f64a38
BLAKE2b-256 9686f1ec4c4d689800a9257617b199f912047e44479d49e4dfc4a42aed8e961c

See more details on using hashes here.

File details

Details for the file sciv-0.0.175-py3-none-any.whl.

File metadata

  • Download URL: sciv-0.0.175-py3-none-any.whl
  • Upload date:
  • Size: 124.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.10.0

File hashes

Hashes for sciv-0.0.175-py3-none-any.whl
Algorithm Hash digest
SHA256 fbf68c4e69c8a8f03a77534272f589c36a8cacf0803df2022bd93fb56e914f6b
MD5 22f9ee1aac561f9877c6c5f08b1c6b51
BLAKE2b-256 268b6e3b17b3672078c39a6aa8e1b1b2415ed859814c7ed7a2f8c288fd42b4b2

See more details on using hashes here.

Release history Release notifications | RSS feed

0.0.196

2 files

0.0.195

2 files

0.0.194

2 files

0.0.193

2 files

0.0.192

2 files

0.0.190

2 files

0.0.189

2 files

0.0.188

2 files

0.0.187

2 files

0.0.184

2 files

0.0.183

2 files

0.0.182

2 files

0.0.181

2 files

0.0.180

2 files

0.0.179

2 files

0.0.178

2 files

0.0.177

2 files

0.0.176

2 files

This release

0.0.175 This release

2 files

0.0.173

2 files

0.0.172

2 files

0.0.171

2 files

0.0.170

2 files

0.0.169

2 files

0.0.168

2 files

0.0.167

2 files

0.0.166

2 files

0.0.165

2 files

0.0.164

2 files

0.0.163

2 files

0.0.162

2 files

0.0.161

2 files

0.0.160

2 files

0.0.159

2 files

0.0.158

2 files

0.0.157

2 files

0.0.156

2 files

0.0.155

2 files

0.0.154

2 files

0.0.153

2 files

0.0.152

2 files

0.0.151

2 files

0.0.150

2 files

0.0.149

2 files

0.0.148

2 files

0.0.147

2 files

0.0.146

2 files

0.0.145

2 files

0.0.144

2 files

0.0.143

2 files

0.0.142

2 files

0.0.141

2 files

0.0.140

2 files

0.0.139

2 files

0.0.138

2 files

0.0.137

2 files

0.0.136

2 files

0.0.135

2 files

0.0.134

2 files

0.0.133

2 files

0.0.132

2 files

0.0.131

2 files

0.0.130

2 files

0.0.129

2 files

0.0.128

2 files

0.0.127

2 files

0.0.126

2 files

0.0.125

2 files

0.0.124

2 files

0.0.123

2 files

0.0.122

2 files

0.0.121

2 files

0.0.120

2 files

0.0.119

2 files

0.0.118

2 files

0.0.117

2 files

0.0.116

2 files

0.0.115

2 files

0.0.114

2 files

0.0.113

2 files

0.0.112

2 files

0.0.111

2 files

Pre-release

0.0.111b1

2 files

0.0.110

2 files

0.0.109

2 files

0.0.108

2 files

0.0.107

2 files

0.0.106

2 files

0.0.105

2 files

0.0.104

2 files

0.0.103

2 files

0.0.102

2 files

0.0.101

2 files

0.0.100

2 files

0.0.99

2 files

0.0.98

2 files

0.0.97

2 files

0.0.96

2 files

0.0.95

2 files

0.0.94

2 files

0.0.93

2 files

0.0.91

2 files

0.0.90

2 files

0.0.89

2 files

0.0.88

2 files

0.0.87

2 files

0.0.86

2 files

0.0.85

2 files

0.0.84

2 files

0.0.83

2 files

0.0.82

2 files

0.0.81

2 files

0.0.80

2 files

0.0.79

2 files

0.0.78

2 files

0.0.77

2 files

0.0.76

2 files

0.0.75

2 files

0.0.74

2 files

0.0.73

2 files

0.0.72

2 files

0.0.71

2 files

0.0.70

2 files

0.0.69

2 files

0.0.68

2 files

0.0.67

2 files

0.0.66

2 files

0.0.64

2 files

0.0.63

2 files

0.0.62

2 files

0.0.61

2 files

0.0.60

2 files

0.0.59

2 files

0.0.57

2 files

0.0.56

2 files

0.0.55

2 files

0.0.54

2 files

0.0.53

2 files

0.0.52

2 files

0.0.51

2 files

0.0.50

2 files

0.0.49

2 files

0.0.48

2 files

0.0.47

2 files

0.0.46

2 files

0.0.45

2 files

0.0.44

2 files

0.0.43

2 files

0.0.42

2 files

0.0.41

2 files

0.0.40

2 files

0.0.39

2 files

0.0.38

2 files

0.0.37

2 files

0.0.36

2 files

0.0.35

2 files

0.0.34

2 files

0.0.33

2 files

0.0.32

2 files

0.0.31

2 files

0.0.30

2 files

0.0.29

2 files

0.0.28

2 files

0.0.27

2 files

0.0.26

2 files

0.0.25

2 files

0.0.24

2 files

0.0.23

2 files

0.0.22

2 files

0.0.21

2 files

0.0.20

2 files

0.0.19

2 files

0.0.18

2 files

0.0.17

2 files

0.0.16

2 files

0.0.15

2 files

0.0.14

2 files

0.0.13

2 files

0.0.12

2 files

0.0.11

2 files

0.0.10

2 files

0.0.9

2 files

0.0.8

2 files

0.0.7

2 files

0.0.6

2 files

0.0.5

2 files

0.0.4

2 files

0.0.3

2 files

0.0.2

2 files

0.0.1

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page