A python toolkit for single-cell tumor phylogenetic analysis

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  • License: BSD-3-Clause
  • Author: Farid Rashidi
  • Maintainer: Farid Rashidi
  • Tags tumor phylogeny , single cell , tools
  • Requires: Python >=3.11
  • Provides-Extra: dev , docs
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scphylo-tools: a python toolkit for single-cell tumor phylogenetic analysis

overview

scphylo-tools is a comprehensive Python toolkit designed for single-cell tumor phylogenetic analysis. It integrates efficient implementations of state-of-the-art methods to infer evolutionary trees from single-cell genotype data.

Features

  • Phylogenetic Inference: Wrappers and implementations for state-of-the-art inference methods.

  • API & CLI: Provides a Python API as well as command-line tools.

  • Visualization: Built-in visualization tools.

  • Datasets: Access to available datasets.

  • Ease of Use: A unified Python interface for complex phylogenetic workflows.

Installation

Install the package via pip:

pip install scphylo-tools

Documentation

Detailed documentation and tutorials are available at Read the Docs.

Project details

Verified details

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  • License: BSD-3-Clause
  • Author: Farid Rashidi
  • Maintainer: Farid Rashidi
  • Tags tumor phylogeny , single cell , tools
  • Requires: Python >=3.11
  • Provides-Extra: dev , docs
Classifiers

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