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Scout Vesuvius Challenge scrolls: stream and preview Herculaneum CT volumes from a laptop without downloading terabytes or tripping rate limits.

Project description

scrollscout

Scout Vesuvius Challenge scrolls from a laptop — stream and preview the Herculaneum CT volumes without downloading terabytes or tripping the data server's rate limiter.

The scroll volumes are enormous. Scroll 1 alone is 14376 × 7888 × 8096 voxels ≈ 918 GB at full resolution. If you're on a laptop with limited disk, you can't (and shouldn't) download them to take a look. The data is streamable as multiscale OME-Zarr — but two things bite newcomers immediately:

  1. You don't know which resolution level to read. Ask for a full-res cross-section and you'll try to pull hundreds of GB.

  2. Naive reads get rate-limited. A large array[z, y0:y1, x0:x1] makes zarr fire one HTTP request per chunk, all at once. The server replies 429 Too Many Requests and your read dies:

    aiohttp.client_exceptions.ClientResponseError: 429, message='Too Many Requests',
    url='https://dl.ash2txt.org/.../54keV_7.91um_Scroll1A.zarr/0/56/19/26'
    

scrollscout handles both for you: it auto-selects the coarsest pyramid level that satisfies your requested pixel width, and reads it in small, chunk-aligned tiles with exponential backoff on 429, so a read slows down under pressure instead of failing.

Scroll 1 mid cross-section

Scroll 1 (PHerc. Paris 4), middle cross-section — streamed with scrollscout thumb 1 -w 1000. Total transfer: a few MB, not 918 GB.

Install

pip install scrollscout
# optional: use the live scroll catalogue from the official `vesuvius` package
pip install "scrollscout[catalog]"

You must accept the Vesuvius Challenge data license before accessing scroll data. scrollscout does not redistribute any scroll data; it streams the public server on your behalf.

Command line

# list a scroll's multiscale pyramid — see the sizes before you read anything
scrollscout info 1

# stream a middle cross-section to a PNG (auto-picks the pyramid level)
scrollscout thumb 1 --width 1000 -o scroll1.png

# a shallower slice of scroll 2, larger
scrollscout thumb 2 --z-frac 0.25 --width 1200 -o scroll2_quarter.png

scrollscout info 1 prints:

Scroll 1
  pyramid levels (6):
    level             shape (z,y,x)          chunks         scale  approx full size
        0       (14376, 7888, 8096)  (128, 128, 128)  (1.0, 1.0, 1.0)    918.07 GB
        1        (7188, 3944, 4048)  (128, 128, 128)  (2.0, 2.0, 2.0)    114.76 GB
        2        (3594, 1972, 2024)  (128, 128, 128)  (4.0, 4.0, 4.0)     14.34 GB
        3         (1797, 986, 1012)  (128, 128, 128)  (8.0, 8.0, 8.0)      1.79 GB
        4           (899, 493, 506)  (128, 128, 128)  (16.0,16.0,16.0)     0.22 GB
        5           (450, 247, 253)  (128, 128, 128)  (32.0,32.0,32.0)     0.03 GB

Python API

import scrollscout as ss

vol = ss.open_scroll(1)            # streams only ~KB of metadata
print(vol.level_for_width(1000))   # -> Level(path='3', ...)

# get the cross-section as a numpy array (throttle-safe under the hood)
arr = ss.thumbnail(1, z_frac=0.5, width=1000, out="scroll1.png", verbose=True)
print(arr.shape, arr.dtype)        # (986, 1012) uint8

How the throttle-safe read works

  • level_for_width(target_px) picks the coarsest pyramid level whose in-plane width still meets your target. A 1000 px view comes from level 3 (~64 chunks), never level 0 (~4000 chunks). Under-fetching is the first line of defense.
  • read_slice() walks the chosen slice in tile-sized blocks with a short pause between tiles, and retries each tile with exponential backoff (base_delay * 2**n) when the server returns 429. Non-rate-limit errors propagate immediately.

Scope & limitations

  • Reads scroll volumes (the volumes_zarr* OME-Zarr). Segment/surface meshes and ink predictions are out of scope for v0.1.
  • Preview/QA tool, not an analysis pipeline — it gets you looking at the data fast so you can decide where to work.
  • Cross-sections are on the z axis (the scan slice axis) for now.

License

MIT (see LICENSE). Scroll data itself is governed by the Vesuvius Challenge / EduceLab-Scrolls terms and is not included or redistributed here.

If you use scroll data in published work, cite EduceLab-Scrolls: Parsons, S., Parker, C. S., Chapman, C., Hayashida, M., & Seales, W. B. (2023). EduceLab-Scrolls: Verifiable Recovery of Text from Herculaneum Papyri using X-ray CT. arXiv:2304.02084.

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