sctk
Single Cell analysis Tool Kit: A large collection of functions built around the scanpy ecosystem that faciliates preprocessing, clustering, annotation, integration and some down-stream analysis of scRNA-seq data.
Installation
pip install sctk
If you encounter dependency clashes, create a fresh python 3.9 virtual environment (e.g. via conda) and install SCTK there. It may also help to update pip:
pip install --upgrade pip
Usage and Documentation
SCTK's documentation is available here, and features a tutorial and API reference for scAutoQC (an automated QC workflow).
1 maintainer
Metadata
1 maintainer
Release files for sctk 0.2.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| sctk-0.2.4.tar.gz | 392.5 kB | Without provenance | Details for sctk-0.2.4.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| sctk-0.2.4-py3-none-any.whl | Python 3 | none | any | Details for sctk-0.2.4-py3-none-any.whl |
Total release size: 794.9 kB
Release files / sctk-0.2.4.tar.gz
| Download URL | sctk-0.2.4.tar.gz |
|---|---|
| Size | 392.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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poetry/2.2.1 CPython/3.10.16 Linux/4.15.0-213-generic
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Release files / sctk-0.2.4-py3-none-any.whl
| Download URL | sctk-0.2.4-py3-none-any.whl |
|---|---|
| Size | 402.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
poetry/2.2.1 CPython/3.10.16 Linux/4.15.0-213-generic
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Security for sctk 0.2.4
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