Single-cell Variational Inference
Project description
====
scVI
====
.. image:: https://travis-ci.org/YosefLab/scVI.svg?branch=master
:target: https://travis-ci.org/YosefLab/scVI
.. image:: https://codecov.io/gh/YosefLab/scVI/branch/master/graph/badge.svg
:target: https://codecov.io/gh/YosefLab/scVI
.. image:: https://readthedocs.org/projects/scvi/badge/?version=latest
:target: https://scvi.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status
Single-cell Variational Inference
* Free software: MIT license
* Documentation: https://scvi.readthedocs.io.
Installation
--------
1. Install PyTorch: http://pytorch.org
2. Install this repository from source: ``git clone https://github.com/YosefLab/scVI.git``
3. Refer to the examples_ subdirectory for Jupyter notebooks that illustrate usage.
.. _examples: https://github.com/YosefLab/scVI/tree/master/examples
Benchmarks
--------
To recreate the results appearing in the paper referenced below, run
.. code-block::
python ./run_benchmarks.py --dataset=cortex
References
--------
Romain Lopez, Jeffrey Regier, Michael B Cole, Michael Jordan, Nir Yosef.
**"Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing."**
In submission. Preprint available at https://www.biorxiv.org/content/early/2018/03/30/292037
=======
History
=======
0.1.0 (2018-06-12)
0.1.1 (2018-06-14)
0.1.2 (2018-06-16)
------------------
* First release on PyPI.
scVI
====
.. image:: https://travis-ci.org/YosefLab/scVI.svg?branch=master
:target: https://travis-ci.org/YosefLab/scVI
.. image:: https://codecov.io/gh/YosefLab/scVI/branch/master/graph/badge.svg
:target: https://codecov.io/gh/YosefLab/scVI
.. image:: https://readthedocs.org/projects/scvi/badge/?version=latest
:target: https://scvi.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status
Single-cell Variational Inference
* Free software: MIT license
* Documentation: https://scvi.readthedocs.io.
Installation
--------
1. Install PyTorch: http://pytorch.org
2. Install this repository from source: ``git clone https://github.com/YosefLab/scVI.git``
3. Refer to the examples_ subdirectory for Jupyter notebooks that illustrate usage.
.. _examples: https://github.com/YosefLab/scVI/tree/master/examples
Benchmarks
--------
To recreate the results appearing in the paper referenced below, run
.. code-block::
python ./run_benchmarks.py --dataset=cortex
References
--------
Romain Lopez, Jeffrey Regier, Michael B Cole, Michael Jordan, Nir Yosef.
**"Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing."**
In submission. Preprint available at https://www.biorxiv.org/content/early/2018/03/30/292037
=======
History
=======
0.1.0 (2018-06-12)
0.1.1 (2018-06-14)
0.1.2 (2018-06-16)
------------------
* First release on PyPI.
Project details
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