seEvo1D 1.2.5

Software for simulating slightly effect mutations impact on population evolution in tau leap version.

Installation

seEvo1D is python based lib available at pypi

python -m pip install seEvo1D

dependecies will be installed with program

Usage

To run program simply type in command line

python -m seEvo1D

basicly seEvo is standalone program which provides possibility to simulate slighlty effect evolution in one dimension - slightly advantegous, slightly deleterious

Instructions

Program contains 4 main views and main status UI

Output buttons provides possibility to draw images from saved files. Each file should have extension '.npz' as default from program. User can create multiple figures from multiple files. Each picture will be save to same directory from which file is loaded, in folder 'Figures'.

population growth plot demands selection of multiple files to track population size. combined mutation wave plot provides possibility to draw both analytic and simulated mutation wave on one plot. multiple files can be selected to draw on one figure.

License

GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007

Copyright (C) 2007 Free Software Foundation, Inc. https://fsf.org/ Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed.

Disclaimer

seEvo - slighltly effect evolution simulator basing on Gillespie algorithm. Copyright (C) 2022 by Jarosław Gil

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.

Author

Jarosław Gil, Silesian Univeristy of Technology, Department of Computer Graphics, Vision and Digital Systems.