seaice3p 0.25.0

Simulate gas bubbles and oil droplets in sea ice.

seaice3p

Code for simulating gas content of sea ice in 1D using enthalpy method.

Install

Install via pip (v0.13.0 and above). To install a specific version run pip install git+file:///ABSOLUTE/PATH/TO/LOCAL/GIT/REPO@vX.X.X. Alternatively use poetry to build a wheel for a specific version and pip install this.

Usage

Save configurations for a simulation (either dimensional or non-dimensional but not a mixture) as yaml files. This can be done by editing examples or by using classes within the dimensional_params and params modules. Once you have a directory of configuration files the simulation for each can be run using python -m seaice3p path_to_configuration_directory path_to_output_directory. The --dimensional flag should be added to this command if running dimensional parameter configurations. The simulation will be run for each configuration and the data saved as a numpy archive with the same name as the simulation in the specified output directory. Example script that generates, runs and plots a simulation can be run with python -m seaice3p.example.

Documentation

found in the docs/ directory

• Changelog.md
• manual.pdf is the sphinx generated documentation from docstrings. Generate by running make latexpdf in the docs/ directory and then copying the ouput in the docs/build/ directory to docs/manual.pdf.
• numerical_method.pdf is a written description of the numerical method used for each solver option.

Tests

Run pytest to run all tests. Note this may take some time so you can also run pytest -m "not slow". To speed this up run in parallel using pytest-xdist with the extra options pytest -n auto --dist worksteal.

Release checklist

• run tests.
• bump version number in seaice3p/init.py
• bump version number in sphinx documentation in docs/source/conf.py
• bump version number in pyproject.toml
• run sphinx-apidoc -o docs/source seaice3p to generate source files for documentation.
• create docs by running make latexpdf in docs/ directory and put pdf from build directory into docs/
• update Changelog.md
• tag commit with version number