SeamlessF5
SeamlessF5 adds useful missing features that helps making transitions to Oxford Nanopore Technologies's new multi-read FAST5 format.
Installation
SeamlessF5 can be installed using pip for Python 3.5+.
pip install seamlessf5
Conversion from single FAST5 files in tar to multi-read FAST5
With the sf5_single_to_multi_fast5 wrapper, ONT's single_to_multi_fast5
becomes capable of loading single-read FAST5 files from tar or compressed
tar files.
sf5_single_to_multi_fast5 -i fast5.tar.gz -s save_path --recursive
Running albacore for multi-read FAST5
This package also installs wrappers, sf5_read_fast5_basecaller.py,
sf5_full_1dsq_basecaller.py, and sf5_paired_read_basecaller.py which
enable loading multi-read FAST5 files for ONT's albacore.
sf5_read_fast5basecaller.py -i multiread-fast5-dir ...
1 maintainer
Release files for seamlessf5 0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| seamlessf5-0.2.tar.gz | 6.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| seamlessf5-0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 14.7 kB
Release files / seamlessf5-0.2.tar.gz
| Download URL | seamlessf5-0.2.tar.gz |
|---|---|
| Size | 6.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.12.1 pkginfo/1.4.2 requests/2.20.1 setuptools/39.0.1 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.7
|
Release files / seamlessf5-0.2-py3-none-any.whl
| Download URL | seamlessf5-0.2-py3-none-any.whl |
|---|---|
| Size | 8.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.12.1 pkginfo/1.4.2 requests/2.20.1 setuptools/39.0.1 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.7
|
