segmentmesher 0.1.1

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SegmentMesher

Segmentmesher is a small python-application for creating labeled 2D meshes from segmented png-images. A few example images are located in the resources-folder.

To install run

pip install .

and to run:

segmentmesher -i resources/pixelbrain.png -o 2dbrain.vtu --visualize

which will first open a pyplot-window showing the input image, then upon closing the pyplot-window the segments will be meshed and stored to the file 2dbrain.vtu which will be visualized in a pyvista-window. If you drop the --visualize-flag nothing will be shown underways, and the mesh can be inspected by e.g. paraview.

To see possible arguments, run

segmentmesher --help