sferriol-zarr 0.4.0

Read only Zarr storage

sferriol-zarr

sferriol-zarr is a module with new zarr storage class TarStore (only read-only).

It also has the create_store shortcut that returns the store corresponding to the specified url

Installation

pip install git+https://gitlab.in2p3.fr/sferriol-ip2i/sferriol-zarr.git

TarStore Usage

import zarr
import sferriol.zarr

# original zarr storage

dir_store =  zarr.DirectoryStore('data/example.zarr')
z = zarr.create(store=dir_store, overwrite=True, shape=1000000, dtype='i4')


# convert it to tar file ('data/example.zarr.tar')

tar_fpath = sferriol.zarr.create_tar('data/example.zarr')


# now use TarStore

tar_store =  sferriol.zarr.TarStore('data/example.zarr.tar')
tz = zarr.open(store=tar_store, mode='r')
tar_store.close()  # don't forget to call this when you're done


# or in a with statement

with sferriol.zarr.TarStore('data/example.zarr.tar') as tar_store:
    tz = zarr.open(store=tar_store, mode='r')

create_store Usage

from sferriol.zarr import create_store

# local storage

store = create_store('/.../my_data.zarr')
store = create_store('/.../my_data.zarr.tar')
store = create_store('/.../my_data.zarr.zip')

# xrootd storage

store = create_store('root://host:port///.../my_data.zarr')
store = create_store('root://host:port///.../my_data.zarr.tar')
store = create_store('root://host:port///.../my_data.zarr.zip')