sheaf-serve 0.11.0

Unified serving layer for non-text foundation models

Sheaf

Unified serving layer for non-text foundation models.

vLLM solved inference for text LLMs by defining a standard compute contract and optimizing behind it. The same problem exists for every other class of foundation model — time series, tabular, molecular, geospatial, diffusion, audio — and nobody has solved it. Sheaf is that solution.

Each model type gets a typed request/response contract. Batching, caching, and scheduling are optimized per model type. Ray Serve is the substrate. Feast is a first-class input primitive.

In mathematics, a sheaf tracks locally-defined data that glues consistently across a space. Each model type defines its own local contract; Sheaf ensures they cohere into a unified serving layer.

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Install

Try it without installing — a live deployment of amazon/chronos-bolt-tiny is running on Modal at:

https://korbonits--sheaf-demo-modalserver---init----locals---serve.modal.run

curl https://korbonits--sheaf-demo-modalserver---init----locals---serve.modal.run/chronos/health

Requires Python 3.11+. macOS's system python3 is usually 3.10 — bootstrap a 3.11 venv first via uv (uv venv --python 3.11 .venv && source .venv/bin/activate) or pyenv. The [molecular] and [protein] extras (ESM-3 / ESMC / ESMFold2) additionally require Python 3.12+, and the two are mutually exclusive (they share the esm import name from different packages).

pip install sheaf-serve                           # core only
pip install "sheaf-serve[time-series]"            # + Chronos2 / TimesFM / Moirai
pip install "sheaf-serve[tabular]"                # + TabPFN
pip install "sheaf-serve[molecular]"              # + ESM-3  (Python 3.12+)
pip install "sheaf-serve[protein]"                # + ESMC / ESMFold2 deps (Python 3.12+)
# then also (no PyPI release yet — pinned commit per upstream README):
pip install "esm@git+https://github.com/Biohub/esm.git@81b3646c9429ea8458918415ad6a46178cb59833"
pip install "sheaf-serve[genomics]"               # + Nucleotide Transformer
pip install "sheaf-serve[small-molecule]"         # + MolFormer
pip install "sheaf-serve[materials]"              # + MACE-MP
pip install "sheaf-serve[audio]"                  # + Whisper / faster-whisper
pip install "sheaf-serve[audio-generation]"       # + MusicGen
pip install "sheaf-serve[tts]"                    # + Bark
pip install "sheaf-serve[vision]"                 # + DINOv2 / OpenCLIP / SAM2 / Depth Anything / DETR
pip install "sheaf-serve[earth-observation]"      # + Prithvi
pip install "sheaf-serve[weather]"                # + GraphCast
pip install "sheaf-serve[feast]"                  # + Feast feature store integration
pip install "sheaf-serve[modal]"                  # + Modal serverless deployment
pip install "sheaf-serve[batch]"                  # + offline batch inference (Ray Data)
pip install "sheaf-serve[all]"                    # everything

Quickstart

Direct backend inference:

from sheaf.api.time_series import Frequency, OutputMode, TimeSeriesRequest
from sheaf.backends.chronos import Chronos2Backend

backend = Chronos2Backend(model_id="amazon/chronos-bolt-tiny", device_map="cpu")
backend.load()

req = TimeSeriesRequest(
    model_name="chronos-bolt-tiny",
    history=[312, 298, 275, 260, 255, 263, 285, 320,
             368, 402, 421, 435, 442, 438, 430, 425],
    horizon=12,
    frequency=Frequency.HOURLY,
    output_mode=OutputMode.QUANTILES,
    quantile_levels=[0.1, 0.5, 0.9],
)

response = backend.predict(req)
# response.mean, response.quantiles

Ray Serve (production, autoscaling):

from sheaf import ModelServer
from sheaf.spec import ModelSpec, ResourceConfig
from sheaf.api.base import ModelType

server = ModelServer(models=[
    ModelSpec(
        name="chronos",
        model_type=ModelType.TIME_SERIES,
        backend="chronos2",
        backend_kwargs={"model_id": "amazon/chronos-bolt-small"},
        resources=ResourceConfig(num_gpus=1),
    ),
])
server.run()  # POST /chronos/predict, GET /chronos/health

Feast feature store (resolve features at request time):

# ModelSpec wires Feast — no history needed in the request
spec = ModelSpec(
    name="chronos",
    model_type=ModelType.TIME_SERIES,
    backend="chronos2",
    feast_repo_path="/feast/feature_repo",
)

# Client sends feature_ref instead of raw history
{
    "model_type": "time_series",
    "model_name": "chronos",
    "feature_ref": {
        "feature_view": "asset_prices",
        "feature_name": "close_history_30d",
        "entity_key": "ticker",
        "entity_value": "AAPL"
    },
    "horizon": 7,
    "frequency": "1d"
}

Modal (serverless, zero-infra):

from sheaf import ModalServer

server = ModalServer(models=[spec], app_name="my-sheaf", gpu="A10G")
app = server.app  # modal deploy my_server.py

Docker:

FROM ghcr.io/korbonits/sheaf-serve:v0.10.0
RUN pip install --no-cache-dir 'sheaf-serve[time-series]==0.10.0'
COPY server.py .
CMD ["python", "server.py"]

The base image is sheaf-serve core only; extend with the backend extras you need. See examples/docker/ for a worked example with a runnable server.py.

Kubernetes (KubeRay):

examples/k8s/ ships a RayService manifest that deploys the same ModelSpec shape via the KubeRay operator. sheaf.build_app(spec) returns the Ray Serve Application directly, so it slots into KubeRay's serveConfigV2.applications[].import_path:

# app.py — referenced by the manifest as `import_path: app:app`
from sheaf import build_app
from sheaf.spec import ModelSpec
spec = ModelSpec(name="chronos", ...)
app = build_app(spec)

Typed Python client:

from sheaf.client import SheafClient
from sheaf.api.time_series import Frequency, TimeSeriesRequest

with SheafClient(base_url="http://localhost:8000") as client:
    resp = client.predict(
        "chronos",
        TimeSeriesRequest(
            model_name="chronos",
            history=[1.0, 2.0, 3.0, 4.0, 5.0],
            horizon=3,
            frequency=Frequency.HOURLY,
        ),
    )
# resp is a typed TimeSeriesResponse — same Pydantic class the server returned
print(resp.mean)

AsyncSheafClient is the async-mirror; client.stream(deployment, request) yields SSE events for streaming backends like FLUX.

See examples/ for time series comparison, tabular, audio, vision, and the Feast feature store quickstart.

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Protein models

Sheaf serves three protein foundation models, each via its own typed contract:

• ESM-3 (api/molecular.py, backend esm3) — per-sequence pooled embeddings (mean / cls). Use for sequence-level similarity, clustering, and downstream featurization. [molecular] extra (Python 3.12+).
• ESMC (api/protein_language.py, backend esmc) — per-token logits + optional per-token embeddings from Biohub's 2026-05-27 release. Use when you need masked-LM logits, per-residue representations, or all-layer hidden states. Default model: Biohub/ESMC-6B. [protein] extra (Python 3.12+); 300M / 600M variants are Forge API-only and currently raise NotImplementedError.
• ESMFold2 (api/structure.py, backend esmfold2) — protein structure prediction with inference-time scaling. Exposes num_loops, num_sampling_steps, num_samples, seed as first-class request fields; returns PDB / mmCIF + pLDDT + pTM/ipTM + optional PAE. Default model: biohub/ESMFold2. [protein] extra (Python 3.12+).

[molecular] (ESM-3) and [protein] (ESMC + ESMFold2) share the esm import name from different upstream packages — install one or the other in a given environment. See docs/adr/0001-esmc-esmfold2-integration.md for the rationale.

Biohub release announcement: https://github.com/Biohub/esm · preprint: https://biohub.ai/papers/esm_protein.pdf.

Supported model types

Type	Status	Backends
Time series	✅ v0.1	Chronos2, Chronos-Bolt, TimesFM, Moirai
Tabular	✅ v0.1	TabPFN v2
Audio transcription	✅ v0.3	Whisper, faster-whisper
Audio generation	✅ v0.3	MusicGen
Text-to-speech	✅ v0.3	Bark
Vision embeddings	✅ v0.3	OpenCLIP, DINOv2
Segmentation	✅ v0.3	SAM2
Depth estimation	✅ v0.3	Depth Anything v2
Object detection	✅ v0.3	DETR / RT-DETR
Protein / molecular	✅ v0.3	ESM-3 (Python 3.12+)
Protein language modeling	✅ v0.11	ESMC 6B (Biohub)
Protein structure prediction	✅ v0.11	ESMFold2 (Biohub) — inference-time scaling
Genomics	✅ v0.3	Nucleotide Transformer
Small molecule	✅ v0.3	MolFormer-XL
Materials science	✅ v0.3	MACE-MP-0
Earth observation	✅ v0.3	Prithvi (IBM/NASA)
Weather forecasting	✅ v0.3	GraphCast
Cross-modal embeddings	✅ v0.3	ImageBind (text, vision, audio, depth, thermal)
Feast feature store	✅ v0.3	Any Feast online store (SQLite, Redis, DynamoDB, …)
Modal serverless	✅ v0.3	ModalServer — zero-infra GPU deployment
Diffusion / image gen	✅ v0.4	FLUX (schnell, dev)
Video understanding	✅ v0.4	VideoMAE, TimeSformer
LiDAR / 3D point cloud	✅ v0.5	PointNet (pure PyTorch; embed + ModelNet40 classify)
Pose estimation	✅ v0.5	ViTPose (COCO 17-keypoint, optional person bboxes)
Optical flow	✅ v0.5	RAFT (raft_large / raft_small via torchvision)
Multimodal generation	✅ v0.5	SDXL img2img + inpainting
Speech synthesis	✅ v0.5	Kokoro (voice + speed per request)
Offline batch inference	✅ v0.6	BatchRunner (Ray Data; tasks + actor-pool modes)
Async-job worker	✅ v0.7	SheafWorker (Redis Streams; pluggable queue/result ABCs)
LoRA adapter multiplexing	✅ v0.8	FLUX, SDXL via ModelSpec.lora (local paths + HF Hub sources)

Roadmap to production

v0.2 — serving layer (complete)

• Ray Serve integration tested end-to-end
• Async predict() handlers
• HTTP API with proper request validation (422 on bad input)
• Health check and readiness probe endpoints
• Batching scheduler (BatchPolicy wired into @serve.batch per deployment)
• Error handling at the service boundary (backend exceptions → structured HTTP 500)
• Model hot-swap without restart (ModelServer.update())
• Container-friendly auth for TabPFN v2 (TABPFN_TOKEN env var)

v0.3 — model types + integrations (complete)

• ESM-3 protein embeddings
• Nucleotide Transformer genomics embeddings
• MolFormer-XL small molecule embeddings
• MACE-MP-0 materials (energy, forces, stress)
• Whisper / faster-whisper audio transcription
• MusicGen audio generation
• Bark text-to-speech
• OpenCLIP image/text embeddings
• DINOv2 image embeddings
• SAM2 segmentation
• Depth Anything v2 depth estimation
• DETR / RT-DETR object detection
• Prithvi earth observation embeddings
• GraphCast weather forecasting
• ImageBind cross-modal embeddings (text, vision, audio, depth, thermal)
• Feast feature store integration (feature_ref in requests, FeastResolver, feast_repo_path on ModelSpec)
• Modal serverless deployment (ModalServer — zero-infra alternative to Ray Serve)

v0.4 — generation + video (complete)

• FLUX diffusion / image generation
• VideoMAE / TimeSformer video understanding

v0.5 — observability + new modalities

Ops / DX:

• PyPI publish (v0.4.0)
• Prometheus metrics endpoint per deployment
• Structured logging with request IDs end-to-end
• OpenTelemetry traces through the request path

Serving / infra:

• Streaming responses (POST /{name}/stream → SSE; FLUX emits per-step progress events)
• Request caching (CacheConfig on ModelSpec — in-process LRU, optional TTL)
• bucket_by batching — group requests by field value before @serve.batch

New model types:

• LiDAR / 3D point cloud (PointNet — pure-PyTorch, no torch-geometric; embed + ModelNet40 classify; install with pip install 'sheaf-serve[lidar]')
• Pose estimation (ViTPose — COCO 17-keypoint skeleton, optional person bboxes; install with pip install 'sheaf-serve[pose]')
• Optical flow (RAFT — raft_large/raft_small via torchvision; (H, W, 2) float32 flow field; install with pip install 'sheaf-serve[optical-flow]')
• Multimodal generation — text+image-conditioned (SDXL img2img + inpainting; install with pip install 'sheaf-serve[multimodal-generation]')
• Speech synthesis with fine-grained control (Kokoro — voice + speed per request; install with pip install 'sheaf-serve[kokoro]')

v0.6 — offline batch inference (complete)

• BatchRunner — same backend, same typed contract, offline batch mode; Ray Data map_batches substrate, stateless tasks with a worker-local backend cache so load() fires once per worker (not once per batch); install with pip install 'sheaf-serve[batch]'
• BatchSpec — mirrors ModelSpec for backend selection; JsonlSource/JsonlSink in v1; new sources/sinks (S3, Parquet, Delta) slot in as additional BatchSource/BatchSink subclasses without changing the runner API
• Actor-pool execution mode for warm loads on expensive backends (FLUX, GraphCast, SDXL) — opt-in via BatchSpec.compute="actors" + num_actors=N; load() runs once per actor at __init__ and persists for the actor's lifetime (#13)
• Resumable checkpointing across process restarts (#12)

v0.7 — async-job queue (complete)

• SheafWorker — queue-consumer pattern for long-running inference; v1 ships Redis Streams + consumer groups (horizontal scaling), pluggable JobQueue / ResultStore ABCs for SQS / Kafka follow-ups; install with pip install 'sheaf-serve[worker]'
• Job lifecycle: enqueue → processing → result / dead-letter; at-least-once delivery via XACK-after-persist; per-job webhook on completion (best-effort POST)
• Priority lanes + per-tenant fair queuing

v0.8 — LoRA adapter multiplexing (complete)

• ModelSpec.lora = LoRAConfig(adapters={...}, default="...") — declare per-deployment adapter registry; one GPU deployment serves many fine-tunes
• Per-request adapter selection via DiffusionRequest.adapters / MultimodalGenerationRequest.adapters (with optional adapter_weights for fusion)
• First targets: FLUX (FLUX.1-schnell + FLUX.1-dev), SDXL (img2img + inpaint)
• Local paths and HF Hub sources both supported (hf:org/repo[:weight_file] convention)
• Bucket-by-resolved-adapter inside Ray Serve batch windows: set_active_adapters is called exactly once per homogeneous sub-batch
• Hot-add adapters at runtime without ModelServer.update(spec) (deferred — adds VRAM-eviction / index-sync surface area)
• Expose enable_sequential_cpu_offload on FluxBackend so FLUX + LoRA fits on 16-24 GB GPUs (currently only enable_model_cpu_offload, which leaves ~22 GB resident — Modal LoRA quickstart needs A100 today, this would unlock A10G)

v0.9 — typed Python client (complete)

Ships as sheaf.client inside sheaf-serve (not a separate sheaf-client PyPI package — schemas stay in one tree, no codegen, no drift). Splittable into its own package later if external client contributors arrive or install footprint becomes a real cost.

• SheafClient (sync) + AsyncSheafClient (async, httpx-backed); typed predict(deployment, request) -> response against the discriminated AnyResponse union
• health() / ready() helpers; structured exceptions (ValidationError for 422, ServerError for 5xx, ClientError for transport / decode failures)
• SSE streaming via client.stream(deployment, request) async generator
• RetryConfig with exponential backoff: configurable status codes, connection-error retry toggle, and max_attempts cap. Streams bypass retry by design (re-running yields interleaved progress events).
• Server-side request_id (the UUID minted on the request) is attached to every raised SheafError subclass so callers can log-correlate without holding the original request object.
• OpenAPI export via python -m sheaf.openapi --specs my_module:specs > openapi.json (or sheaf.openapi.generate(specs) programmatically) — backends are not loaded during generation, so it runs without GPU.

v0.10 — container + Kubernetes deployment

Today sheaf ships three deployment paths: ModelServer (a local Ray cluster you bring), ModalServer (Modal serverless), and BatchRunner / SheafWorker (offline / async). Production K8s clusters running their own Ray are common and have no first-class story yet — every team rolls their own image.

• Reference Dockerfile (multi-stage, uv-based; CPU base + CUDA variant) so teams aren't building this from scratch. Pinned to a sheaf release; rebuilt on tag.
• examples/k8s/ with a RayService manifest — KubeRay's canonical Ray-on-K8s shape — and a short README.md covering prereqs (KubeRay operator installed), kubectl apply, and a port-forward smoke test.
• GitHub Actions workflow that builds + pushes the Dockerfile to ghcr.io/korbonits/sheaf-serve:vX.Y.Z on v* tag push, mirroring the PyPI publish flow.

v0.11 — Biohub protein-biology release integration

Biohub's "world model of protein biology" landed 2026-05-27 under MIT. Sheaf integrates the two model artifacts as first-class typed contracts; ESM Atlas (dataset) is out of scope. See docs/adr/0001-esmc-esmfold2-integration.md.

• ESMCBackend — per-token logits + per-token embeddings via transformers.AutoModelForMaskedLM, default Biohub/ESMC-6B.
• ESMFold2Backend — protein structure prediction with num_loops / num_sampling_steps / num_samples / seed as first-class request fields, returning PDB / mmCIF + pLDDT + pTM/ipTM + optional PAE.
• New STRUCTURE model category — first non-tensor output category (structure file as text).
• [protein] install extra; esm from git+https://github.com/Biohub/esm.git@81b3646c9429ea8458918415ad6a46178cb59833 documented (no PyPI release yet).
• End-to-end GPU smoke — examples/quickstart_protein_modal.py runs ESMFold2Backend on H100 via Modal (~70s cold start to a persistent volume, sub-second per fold). 53-residue target → 43,088-char mmCIF, pTM=0.2465.
• Forge / Biohub-Platform HTTP-client variants for the ESMC 300M / 600M / ESMFold2-fast API-only models.

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Architecture

┌─────────────────────────────────────────┐
│           API Layer                      │  typed contracts per model type
│  TimeSeriesRequest  TabularRequest  ...  │
├─────────────────────────────────────────┤
│         Scheduling Layer                 │  model-type-aware batching
│  BatchPolicy  RequestQueue               │
├─────────────────────────────────────────┤
│          Backend Layer                   │  pluggable execution + Ray Serve
│  ModelBackend  CacheManager  Feast       │
└─────────────────────────────────────────┘

Adding a new backend takes one class:

from sheaf.backends.base import ModelBackend
from sheaf.registry import register_backend

@register_backend("my-model")
class MyModelBackend(ModelBackend):
    def load(self) -> None:
        self._model = load_my_model()

    def predict(self, request):
        ...

    @property
    def model_type(self):
        return "time_series"

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Contributing

Issues and PRs welcome. See CONTRIBUTING.md for development setup.

License

Apache 2.0