sigc
install
pip install sigccore usage
import sigc
kegg_metabolism = sigc.metabolism_sigs(resources='KEGG')
# other custom signature gene sets also support
df = pd.read_table("cells_X_genes.mat", header=0, index_col=0)
sig_mtx = sigc.sigc_score(df, kegg_metabolism, method="AUCell")
# sig_mtx: cells_X_signaturessignature example
name |
description |
member |
|---|---|---|
Glycolysis |
00010 |
HK3 |
Glycolysis |
00010 |
HK1 |
Glycolysis2 |
describ2 |
geneX |
Documentation
Extensive documentation and tutorials are available at https://sigc.readthedocs.io
1 maintainer
Metadata
1 maintainer
Release files for sigc 0.1.18
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
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| sigc-0.1.18.tar.gz | 775.5 kB | Without provenance | Details |
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|---|---|---|---|---|
| sigc-0.1.18-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 803.5 kB
Release files / sigc-0.1.18.tar.gz
| Download URL | sigc-0.1.18.tar.gz |
|---|---|
| Size | 775.5 kB |
| Tags | Source |
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Release files / sigc-0.1.18-py3-none-any.whl
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| Size | 28.0 kB |
| Tags | Python 3 |
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