sigil-pipeline 2.6.0

Static analysis pipeline for generating high-quality Rust code datasets for model fine-tuning. Phase 2 dataset generation with Phase 1 format alignment.

Sigil Pipeline v2.6.0

A static analysis pipeline for generating high-quality Rust code datasets for model fine-tuning. The pipeline analyzes Rust crates using static analysis tools and generates training datasets in JSONL format.

📖 Ecosystem Architecture: For a comprehensive overview of how this project integrates with SigilDERG-Finetuner and human-eval-Rust, see ARCHITECTURE.md.

Version 2.6.0 includes:

• Checkpoint/Resume System: Automatic checkpointing allows resuming long-running pipeline executions without losing progress. Preserves temp directories and skips already-processed crates.
• Improved Error Injection: Enhanced error-fixing task generation with fallback to simulated errors when real compilation times out, ensuring more robust task diversity.
• Enhanced Logging: Geiger and License checks now always write logs, even when no issues are found, improving observability and debugging.
• Tool Execution Tracking: Rejection summaries now include flags indicating which analysis tools were executed or skipped.
• Enterprise Observability: Structured logging via structlog, Prometheus-compatible metrics, and optional OpenTelemetry tracing.
• License pre-checking from crates.io API
• Cargo-deny security auditing integration
• Streaming architecture for memory-efficient processing
• Granular filter metrics and observability
• Enhanced quality filtering (unsafe code, outdated dependencies)
• Platform compatibility detection
• Shared cargo target directory for faster builds

Overview

Sigil Pipeline performs comprehensive static analysis on Rust crates to identify high-quality, idiomatic code suitable for training code generation models. It combines:

• Curated Rust crates analyzed through static analysis tools
• The Stack Rust Clean dataset files (from HuggingFace)
• Format validation to ensure consistent dataset structure

The pipeline generates JSONL datasets with prompt-generation pairs that can be used directly for fine-tuning language models.

Features

Static Code Analysis

• Clippy: Detects idiomatic code patterns and lint violations
• Cargo Geiger: Analyzes unsafe code usage and safety metrics
• Cargo Outdated: Assesses dependency maintenance status
• Cargo License: Checks license compliance (with centralized verification logic)
• Cargo Deny: Performs security and license auditing (optional, configurable)
• License Pre-Check: Validates licenses from crates.io API before downloading

Quality Filtering

• Rust Edition: Filters to 2021+ edition crates (modern Rust)
• Clippy Warnings: Category-based max_bad_code_warnings threshold (default: 0, ignores style/doc lints but blocks unsafe or correctness issues). Legacy max_clippy_warnings is still available for total-count filtering.
• Documentation: Requires documentation comments on public items
• Test/Bench Exclusion: Automatically filters out test and benchmark files
• Size/Sanity Filters: Applies Stack dataset filtering criteria (line length, alphabetic ratio)
• License Filtering: Only includes permissively licensed code (MIT, Apache-2.0, BSD, etc.) with SPDX expression support
• Unsafe Code Filtering: Optional threshold for maximum unsafe code items (from Geiger)
• Outdated Dependencies: Optional threshold for maximum outdated dependency ratio
• Platform Compatibility: Automatically skips OS-specific crates incompatible with current platform
• Security Auditing: Optional cargo-deny integration for security advisories and license violations

Dataset Generation

• Prompt Generation: Creates instruction prompts from code and documentation based on code patterns and doc comments
• Semantic Chunking: Splits large files into snippet-sized chunks (functions, impl blocks, modules) for Phase-2
• Task Type Diversity: Generates multiple task types for Phase-2:
  • Code generation (70% default)
  • Transformations (15% default): sync→async, match→?, iterator conversions
  • Error fixing (10% default): fix compiler errors in broken code with improved fallback to simulated errors when real compilation times out
  • Explanations (5% default): explain code functionality
• Format Validation: Ensures consistent dataset structure
• Dataset Merging: Combines multiple datasets with shuffle and weighting options
• Extra Shards: Append pre-generated instruct-style shards (e.g., experimental upscales) via CLI without moving files
• Train/Val Split by Source: Splits datasets keeping whole crates/files together (tests true generalization)
• Streaming Architecture: Generator-based pipeline for memory-efficient processing of large datasets
• Granular Metrics: Detailed filter reason breakdown for observability

Checkpoint/Resume System

• Automatic Checkpointing: Saves progress periodically (configurable interval, default: every 10 crates)
• Resume from Interruptions: Automatically detects and loads checkpoints on startup
• Temp Directory Preservation: Reuses existing temp directories when resuming, preserving downloaded crates (saves GBs of re-downloads)
• Smart Crate Skipping: Automatically skips already-processed crates to avoid duplicates
• Config Compatibility Checking: Verifies config hash to prevent incompatible resumes
• Checkpoint Location: Defaults to output_dir/checkpoint.json, customizable via --checkpoint-path

Requirements

• Python 3.12+
• Rust toolchain (1.56+ for 2021 edition, 1.72+ for 2024 edition)
• Cargo subcommands:
  • cargo clippy (included with rustup)
  • cargo geiger
  • cargo outdated
  • cargo license
  • cargo deny

See docs/SETUP.md for detailed setup instructions.

Installation

# Clone the repository
git clone https://github.com/Superuser666-Sigil/SigilDERG-Data_Production.git
cd SigilDERG-Data_Production

# Create virtual environment
python -m venv .venv
source .venv/bin/activate  # On Windows: .venv\Scripts\activate

# Install dependencies
pip install -e ".[datasets]"  # tree-sitter for AST parsing is now included in core deps

# Install Rust analysis tools
cargo install cargo-geiger cargo-outdated cargo-license cargo-deny
rustup component add clippy

Quick Start

Command Line

# Analyze specific crates
python -m sigil_pipeline.main --crates serde tokio actix-web

# Use crate list file
python -m sigil_pipeline.main --crate-list data/crate_list.txt

# Phase-2 Instruct Mode (generates diverse task types with semantic chunking)
python -m sigil_pipeline.main \
  --prompt-mode instruct \
  --max-sft-lines 200 \
  --max-sft-chars 8000 \
  --output output/phase2_dataset.jsonl

# Custom task type distribution
python -m sigil_pipeline.main \
  --task-mix '{"code_generation": 0.7, "transformations": 0.15, "error_fixing": 0.1, "explanations": 0.05}'

# Append experimental / pre-generated shards after generation
python -m sigil_pipeline.main \
  --crate-list data/crate_list.txt \
  --extra-phase2-shard experimental/experimental_shard.jsonl \
  --output datasets/phase2_full.jsonl

# Allow longer real error injection (e.g., 3 minutes for cargo check)
python -m sigil_pipeline.main \
  --error-injection-timeout 180 \
  --output datasets/phase2_full.jsonl

# Checkpoint/Resume: Automatically saves progress and can resume from interruptions
# Checkpoint is saved to output_dir/checkpoint.json by default
python -m sigil_pipeline.main \
  --crate-list data/crate_list.txt \
  --output datasets/phase2_full.jsonl \
  --checkpoint-interval 10  # Save checkpoint every 10 crates (default)

# Resume from checkpoint (automatically detected if checkpoint.json exists)
python -m sigil_pipeline.main \
  --crate-list data/crate_list.txt \
  --output datasets/phase2_full.jsonl
# Pipeline will automatically skip already-processed crates and reuse temp directory

# Custom checkpoint path
python -m sigil_pipeline.main \
  --checkpoint-path logs/my_checkpoint.json \
  --crate-list data/crate_list.txt \
  --output datasets/phase2_full.jsonl

# Disable checkpointing
python -m sigil_pipeline.main \
  --no-checkpointing \
  --crate-list data/crate_list.txt \
  --output datasets/phase2_full.jsonl

Python API

import asyncio
from sigil_pipeline.config import PipelineConfig
from sigil_pipeline.main import run_pipeline

async def main():
    config = PipelineConfig(
        crates=["serde", "tokio"],
        output_path="output/dataset.jsonl",
    )
    
    await run_pipeline(config)

if __name__ == "__main__":
    asyncio.run(main())

Configuration

The pipeline uses a PipelineConfig dataclass for all settings. Key options:

from sigil_pipeline.config import PipelineConfig

config = PipelineConfig(
    # Crates to analyze
    crates=["serde", "tokio"],
    crate_list_path="data/crate_list.txt",  # Or specify individual crates
    
    # Quality thresholds
    allow_edition_2018=False,  # Only 2021+ edition
    max_bad_code_warnings=0,  # Strict filter for critical lints (style lints ignored)
    require_docs=True,  # Require documentation
    
    # Advanced filtering
    max_unsafe_items=None,  # Optional: max unsafe code items (None = no filter)
    max_outdated_ratio=None,  # Optional: max outdated dependency ratio
    enable_deny_scan=False,  # Optional: cargo-deny security auditing
    
    # File filtering
    max_line_length=100,
    min_alphabetic_ratio=0.3,  # Filters minified code
    
    # Error injection controls
    enable_error_injection=True,
    error_injection_method="both",
    error_injection_timeout=120,
    
    # Performance
    reuse_cargo_target=True,  # Share cargo target directory (output/cargo_target_cache by default)
    
    # Checkpoint/Resume
    enable_checkpointing=True,  # Enable automatic checkpointing (default: True)
    checkpoint_path=None,  # Custom checkpoint path (default: output_dir/checkpoint.json)
    checkpoint_interval=10,  # Save checkpoint every N crates (default: 10)
    
    # Output
    output_path="output/dataset.jsonl",
    max_threads=4,  # Parallel processing
)

Configuration can be loaded from JSON or YAML files:

python -m sigil_pipeline.main --config config.yaml

Output Format

The pipeline generates JSONL files (one JSON object per line) with the following structure:

{"prompt": "Write a Rust program that demonstrates error handling", "gen": "use anyhow::Result;\n\nfn main() -> Result<()> {\n    // ...\n}"}
{"prompt": "Write a Rust code example that uses iterators", "gen": "fn process_data(items: &[i32]) -> Vec<i32> {\n    items.iter().map(|x| x * 2).collect()\n}"}

Each line contains:

• prompt: Instruction prompt describing what the code does
• gen: Generated code (plain text, UTF-8 encoded)

See docs/DATASET_SCHEMA.md for detailed format specification.

Project Structure

sigil_pipeline/          # Main pipeline package
├── main.py             # Pipeline orchestration and CLI entry point
├── config.py           # Configuration management
├── crawler.py          # Crate downloading and Stack dataset integration
├── analyzer.py         # Static analysis tools execution
├── filter.py           # Quality filtering heuristics
├── chunker.py          # Semantic code chunking (Phase-2)
├── task_generator.py   # Task type generation (Phase-2)
├── dataset_builder.py  # Prompt generation and dataset assembly
├── dataset_splitter.py # Train/val splitting by source
├── exporter.py         # JSONL export and dataset merging
├── format_validator.py # Format validation
├── observability.py    # Structured logging and metrics
├── telemetry.py        # OpenTelemetry tracing (optional)
└── utils.py            # Utilities (cargo commands, file I/O, etc.)

tools/                   # Dataset utilities
├── analyze_failures.py         # Analyze pipeline rejection reasons
├── convert_jsonl_to_parquet.py # Convert JSONL to Parquet
├── convert_parquet_to_jsonl.py # Convert Parquet to JSONL
├── split_jsonl.py              # Split large JSONL into chunks
├── split_train_val.py          # Create train/val splits
├── rebalance_task_mix.py       # Adjust task type distribution
└── verify_format_test.py       # Validate format compliance

scripts/                 # Setup and release scripts
├── create_release.py           # Release automation
└── setup/
    └── setup_rust_analysis_tools.py  # Install Rust tools

tests/                   # Test suite
benches/                 # Performance benchmarks
docs/                    # Documentation

Tools

The repository includes utility scripts for dataset manipulation and analysis.

Failure Analysis

tools/analyze_failures.py

• Parses the latest (or specified) analysis logs
• Categorizes Clippy warnings (ignores style warnings, flags unsafe/bad code)
• Detects license rejections from the main pipeline log
• Automatically removes license-rejected crates from data/crate_list.txt (unless --no-cleanup)
• Can write a full report to disk

# Auto-detect most recent analysis directory
python tools/analyze_failures.py

# Specify locations explicitly
python tools/analyze_failures.py \
  --log-dir logs/analysis_20251124_180335 \
  --log-file logs/phase2_full_run.log \
  --crate-list data/crate_list.txt \
  --output logs/failure_analysis.txt

# Skip automatic crate_list cleanup
python tools/analyze_failures.py --no-cleanup

Dataset Utilities

tools/split_train_val.py

• Splits a dataset into train/val files while keeping whole crates/files together.

python tools/split_train_val.py \
  --input datasets/phase2_full.jsonl \
  --train output/train.jsonl \
  --val output/val.jsonl \
  --val-ratio 0.1

tools/split_jsonl.py

• Splits large JSONL files into ~11MB chunks without breaking JSON objects.

python tools/split_jsonl.py \
  --input datasets/phase2_full.jsonl \
  --output-dir datasets/chunks \
  --prefix phase2_chunk

tools/convert_jsonl_to_parquet.py

• Converts JSONL datasets to Parquet, supporting both training-ready (metadata stripped) and provenance variants.

python tools/convert_jsonl_to_parquet.py \
  --input datasets/phase2_full.jsonl \
  --output datasets/phase2_full.parquet \
  --variant training

tools/convert_parquet_to_jsonl.py

• Converts Parquet datasets back to JSONL (useful for inspection or smaller workflows).

python tools/convert_parquet_to_jsonl.py \
  --input datasets/phase2_full.parquet \
  --output datasets/phase2_roundtrip.jsonl

tools/verify_format_test.py

• Quick check to ensure a dataset matches the Phase 1 format specification.

python tools/verify_format_test.py --input datasets/phase2_full.jsonl

tools/rebalance_task_mix.py

• Downsamples (or lightly reweights) a JSONL dataset to match a desired _task_type distribution and writes a summary report.

python tools/rebalance_task_mix.py \
  --input datasets/phase2_full.jsonl \
  --output datasets/phase2_balanced.jsonl \
  --target-mix code_generation=0.5,error_fixing=0.25,transformations=0.15,explanations=0.10

Testing

# Run all tests (672 tests)
pytest tests/

# Run with coverage report
pytest tests/ --cov=sigil_pipeline --cov-report=term-missing

# Run specific test modules
pytest tests/test_api_tracker.py -v          # API evolution tracking
pytest tests/test_ast_patterns.py -v         # AST-based extraction
pytest tests/test_task_generator.py -v       # Task type generation
pytest tests/test_telemetry.py -v            # OpenTelemetry tracing
pytest tests/test_converters.py -v           # Format conversion
pytest tests/test_dataset_splitter.py -v     # Train/val splitting

# Run tests by keyword
pytest tests/ -k "api" -v                    # API-related tests
pytest tests/ -k "ast" -v                    # AST parsing tests

# Run property-based tests
pytest tests/test_properties.py -v --hypothesis-show-statistics

# Run local CI checks
python test_ci_local.py

Test Coverage Summary

Category	Modules	Coverage
Core Pipeline	analyzer, filter, config	81-99%
AST Processing	ast_patterns, task_generator	78-80%
API Tracking	api_tracker, usage_analyzer	79-89%
Data Processing	dataset_splitter, converters	63-98%
Infrastructure	telemetry, utils, environment	77-91%
CLI	ecosystem, main	42-93%

Overall Coverage: 75% (4845 statements, 672 tests passing)

SigilDERG Ecosystem Integration

This package is part of the SigilDERG ecosystem for Rust code model training. It integrates seamlessly with:

• sigilderg-finetuner: QLoRA fine-tuning for Rust code models
• human-eval-rust: Evaluation harness for Rust code generation

Install Full Ecosystem

pip install sigil-pipeline[ecosystem]

This installs all three packages with proper version constraints.

Complete Workflow

1. Generate dataset (this package):

   python -m sigil_pipeline.main --output datasets/phase2_full.jsonl
   

2. Fine-tune model (sigilderg-finetuner):

   sigilderg-train configs/llama8b-phase2.yml  # Uses local:datasets/phase2_full.jsonl
   

3. Evaluate model (human-eval-rust):

   sigilderg-eval samples.jsonl --use-human-eval
   

Unified CLI

Use the unified orchestrator for the complete workflow:

sigil-ecosystem \
    --crate-list data/crate_list.txt \
    --dataset-path datasets/phase2_full.jsonl \
    --config-path configs/llama8b-phase2.yml

See Ecosystem Integration Guide for detailed documentation.

Documentation

• Architecture: Complete ecosystem architecture overview
• Setup Guide: Rust toolchain and cargo subcommand installation
• Dataset Schema: Detailed dataset format specification
• Ecosystem Integration: Complete workflow guide for all three packages
• Clippy Category Filtering: Quality filter documentation
• OS-Agnostic Cargo Commands: Cross-platform cargo usage
• Testing CI Locally: Local CI workflow testing
• Architecture Decision Records: Design decisions and rationale

Docker

The project includes Docker support for containerized execution:

# Build image
docker build -t sigil-pipeline:2.3.0 .

# Run pipeline
docker-compose up

# Interactive shell
docker run -it sigil-pipeline:2.2.0 bash

# Run with custom arguments
docker run -v $(pwd)/output:/app/output sigil-pipeline:2.2.0 \
    --crate-list /app/data/crate_list.txt \
    --output /app/output/dataset.jsonl

See docker-compose.yml and Dockerfile for configuration details.

License

This project is licensed under the MIT License - see the LICENSE file for details.

Acknowledgments

• Rust community for excellent analysis tools (Clippy, Geiger, etc.)
• HuggingFace for the Stack dataset and datasets library
• The Stack dataset contributors for providing high-quality Rust code
• Ammar Nasr for producing and distributing the Stack Rust Clean Dataset (https://huggingface.co/datasets/ammarnasr/the-stack-rust-clean)

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Sigil Pipeline - Generating high-quality Rust code datasets for model fine-tuning.