SimTissue
SimTissue is a python package to simulate in silico smFISH experiment. It can generate 2D or 3D tissue with arbitrary RNA profile and cell shape. Beside it can also sample nuclei position from real experiment and RNA profile from scRNA-seq data.
Installation
pip install SimTissue -r requirements.txt
1 maintainer
Release files for SimTissue 0.0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| simtissue-0.0.3.tar.gz | 9.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| SimTissue-0.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size:21.2 kB
Release files / simtissue-0.0.3.tar.gz
| Download URL | simtissue-0.0.3.tar.gz |
|---|---|
| Size | 9.9 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.8.10
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Release files / SimTissue-0.0.3-py3-none-any.whl
| Download URL | SimTissue-0.0.3-py3-none-any.whl |
|---|---|
| Size | 11.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.8.10
|
