Simularium ReaDDy Models
Tools for building computational biology models and example models from the Simularium project. Includes coarse-grained monomer ReaDDy models for actin, microtubules, and kinesin.
Quickstart
See examples/README.md to run example actin, microtubules, or kinesin models either locally or on AWS with Docker.
Installation
Development Head: pip install git+https://github.com/simularium/simularium_readdy_models.git
Development Install with conda:
(conda is currently required to install readdy.)
- Create a virtual environment with conda-specific dependencies:
conda env create -f environment.yml - Activate the environment:
conda activate readdy_models - Install just command runner:
conda install -c conda-forge just - Install remaining dependencies:
just install
Development
See CONTRIBUTING.md for information related to developing the code.
1 maintainer
Metadata
1 maintainer
Release files for simularium-readdy-models 1.0.0
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| File | Size | Uploaded | Provenance | Actions |
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| simularium_readdy_models-1.0.0.tar.gz | 229.8 kB | Without provenance | Details for simularium_readdy_models-1.0.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
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| simularium_readdy_models-1.0.0-py3-none-any.whl | Python 3 | none | any | Details for simularium_readdy_models-1.0.0-py3-none-any.whl |
Total release size: 466.0 kB
Release files / simularium_readdy_models-1.0.0.tar.gz
| Download URL | simularium_readdy_models-1.0.0.tar.gz |
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| Size | 229.8 kB |
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Release files / simularium_readdy_models-1.0.0-py3-none-any.whl
| Download URL | simularium_readdy_models-1.0.0-py3-none-any.whl |
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| Size | 236.2 kB |
| Tags | Python 3 |
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