Tools for building computational biology models in ReaDDy.
Project description
Simularium ReaDDy Models
Tools for building computational biology models and example models from the Simularium project. Includes coarse-grained monomer ReaDDy models for actin, microtubules, and kinesin.
Quickstart
See examples/README.md to run example actin, microtubules, or kinesin models either locally or on AWS with Docker.
Installation
Development Head: pip install git+https://github.com/simularium/simularium_readdy_models.git
Development Install with conda:
(conda is currently required to install readdy.)
- Create a virtual environment with conda-specific dependencies:
conda env create -f environment.yml - Activate the environment:
conda activate readdy_models - Install just command runner:
conda install -c conda-forge just - Install remaining dependencies:
just install
Development
See CONTRIBUTING.md for information related to developing the code.
Release history Release notifications | RSS feed
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