A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data
Project description
sincei: A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data.
Full Documentation.
Installation
sincei is a command line toolkit based on python3, and can be installed using conda.
Create a new conda environment and install sincei stable release from github using:
conda create -n sincei -c anaconda python=3.8
conda activate sincei
(sincei): pip install sincei
For the latest development version, try:
(sincei): pip install git+https://github.com/vivekbhr/sincei.git@develop#egg=sincei
Usage
Get the tool list with sincei --help
Each tool begins with the prefix sc<tool_name>, such as:
$ scBulkCoverage -b file1.bam -i groupinfo.txt -o coverage
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Source Distribution
sincei-0.3.tar.gz
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