An implementation of [singleCellHaystack](https://github.com/alexisvdb/singleCellHaystack) in python.
Project description
singleCellHaystack-py
This repository contains a python implementation of singleCellHaystack.
Installation
For now, clone this repository, then run the following from the repository folder:
pip install .
Example
import scanpy as sc
import singleCellHaystack as hs
adata = sc.read_h5ad("data.h5ad")
res = hs.haystack(adata)
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