Watches a SLURM job and aborts it if it stops outputting to a logfile
Project description
Usage
Include slurm-watchdog in your slurm script to monitor the job progress and kill the job if it gets stuck.
#!/bin/bash
#SBATCH -J watchdog_example
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --output stdout.txt
#SBATCH --time 1-00:00:00
source .venv/bin/activate
slurm-watchdog stdout.txt &
srun python src/slurm_watchdog/dummyjob.py &
wait $! # wait for srun to finish, but do not wait for the watchdog to finish
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