SESMotifAnalyser: framework for analysing social-ecological systems
This package contains a Python based framework for analysing social-ecological systems and more broadly multi-level networks.
Documentation
A comprehensive documentation is available as PDF. Please contact t.seppelt-dev[ÄT]posteo.de in case of any questions.
See the examples folder for examples.
Installation
The package can be installed using pip.
pip3 install sma
Per default, dependencies required for drawing social-ecological networks will not be installed. The following command may be used to install the additional dependencies:
pip3 install sma[plots]
It has the following dependencies: Python 3, numpy, scipy, networkx, pandas. On the R side it depends on statnet, reticulate (with Python 3).
For a version history, see change log and tags.
Integration in R and motifr 
The functions in this package can to some extent be called from R using the R package reticulate. An example can be found in the examples folder. See also the corresponding section in the documentation.
Mario Angst is working on an R package which provides an interface to the SESMotifAnalyser. His project motifr can be found on Github.
ergm-userterms
In addition to the motif counting features written in Python, this repository contains ergm-userterms for some motifs, e.g. the 3-motifs I.C and II.C (closed and open triangles,
respecting the social-ecological types of the nodes).
After downloading and compiling the package, ergm models can be fitted and the motif counting
can be done directly in R:
netw <- network(...)
# first parameter: which sesType should the nodes at the points of the triangles have
# second parameter: name of nodel attribute
summary(netw ~ openTriangles(0, 'sesType'))
1 maintainer
Release files for sma 2.3.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| sma-2.3.4-py3-none-any.whl | Python 3 | none | any | Details |
Release files / sma-2.3.4-py3-none-any.whl
| Download URL | sma-2.3.4-py3-none-any.whl |
|---|---|
| Size | 78.5 kB |
| Tags | Python 3 |
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