small-gicp 0.0.3

Efficient and parallelized algorithms for fine point cloud registration

small_gicp (fast_gicp2)

small_gicp is a header-only C++ library that offers efficient and parallelized algorithms for fine point cloud registration (ICP, Point-to-Plane ICP, GICP, VGICP, etc.). It is a refined and optimized version of its predecessor, fast_gicp, re-written from scratch with the following features.

• Highly Optimized : The implementation of the core registration algorithm is further optimized from that in fast_gicp. It enables up to 2x speed gain compared to fast_gicp.
• All parallerized : small_gicp offers parallelized implementations of several preprocessing algorithms to make the entire registration process parallelized (Downsampling, KdTree construction, Normal/covariance estimation). As a parallelism backend, either (or both) OpenMP and Intel TBB can be used.
• Minimum dependency : Only Eigen (and bundled nanoflann and Sophus) are required at a minimum. Optionally, it provides the PCL registration interface so that it can be used as a drop-in replacement in many systems.
• Customizable : small_gicp allows feeding any custom point cloud class to the registration algorithm via traits. Furthermore, the template-based implementation enables customizing the registration process with your original correspondence estimator and registration factors.
• Python bindings : The isolation from PCL makes small_gicp's python bindings more portable and connectable to other libraries (e.g., Open3D) without problems.

Note that GPU-based implementations are NOT included in this package.

If you find this package useful for your project, please consider leaving a comment here. It would help the author receive recognition in his organization and keep working on this project.

Requirements

This library uses some C++17 features. The PCL interface is not compatible with PCL older than 1.11 that uses boost::shared_ptr.

Dependencies

• [Mandatory] Eigen, nanoflann (bundled1, bundled2, bundled3), Sophus (bundled)
• [Optional] OpenMP, Intel TBB, PCL, Iridescence

Installation

C++

small_gicp is a header-only library. You can just download and drop it in your project directory to use it.

If you need only basic point cloud registration functions, you can build and install the helper library as follows.

sudo apt-get install libeigen3-dev libomp-dev

cd small_gicp
mkdir build && cd build
cmake .. -DCMAKE_BUILD_TYPE=Release && make -j
sudo make install

Python (Linux / Windows)

cd small_gicp
pip install . --user

# [Optional (linux)] Install stubs for autocomplete (If you know a better way, let me know...)
pip install pybind11-stubgen
cd ~/.local/lib/python3.10/site-packages
pybind11-stubgen -o . --ignore-invalid=all small_gicp

Usage (C++)

The following examples assume using namespace small_gicp is placed somewhere.

Using helper library (01_basic_registration.cpp)

The helper library (registration_helper.hpp) enables easily processing point clouds represented as std::vector<Eigen::Vector(3|4)(f|d)>.

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small_gicp::align takes two point clouds (std::vectors of Eigen::Vector(3|4)(f|d)) and returns a registration result (estimated transformation and some information on the optimization result). This is the easiest way to use small_gicp but causes an overhead for duplicated preprocessing.

#include <small_gicp/registration/registration_helper.hpp>

std::vector<Eigen::Vector3d> target_points = ...;   // Any of Eigen::Vector(3|4)(f|d) can be used
std::vector<Eigen::Vector3d> source_points = ...;   // 

RegistrationSetting setting;
setting.num_threads = 4;                    // Number of threads to be used
setting.downsampling_resolution = 0.25;     // Downsampling resolution
setting.max_correspondence_distance = 1.0;  // Maximum correspondence distance between points (e.g., triming threshold)

Eigen::Isometry3d init_T_target_source = Eigen::Isometry3d::Identity();
RegistrationResult result = align(target_points, source_points, init_T_target_source, setting);

Eigen::Isometry3d T = result.T_target_source;  // Estimated transformation
size_t num_inliers = result.num_inliers;       // Number of inlier source points
Eigen::Matrix<double, 6, 6> H = result.H;      // Final Hessian matrix (6x6)

There is also a way to perform preprocessing and registration separately. This enables saving time for preprocessing in case registration is performed several times for the same point cloud (e.g., typical odometry estimation based on scan-to-scan matching).

#include <small_gicp/registration/registration_helper.hpp>

std::vector<Eigen::Vector3d> target_points = ...;   // Any of Eigen::Vector(3|4)(f|d) can be used
std::vector<Eigen::Vector3d> source_points = ...;   // 

int num_threads = 4;                    // Number of threads to be used
double downsampling_resolution = 0.25;  // Downsampling resolution
int num_neighbors = 10;                 // Number of neighbor points used for normal and covariance estimation

// std::pair<PointCloud::Ptr, KdTree<PointCloud>::Ptr>
auto [target, target_tree] = preprocess_points(target_points, downsampling_resolution, num_neighbors, num_threads);
auto [source, source_tree] = preprocess_points(source_points, downsampling_resolution, num_neighbors, num_threads);

RegistrationSetting setting;
setting.num_threads = num_threads;
setting.max_correspondence_distance = 1.0;  // Maximum correspondence distance between points (e.g., triming threshold)

Eigen::Isometry3d init_T_target_source = Eigen::Isometry3d::Identity();
RegistrationResult result = align(*target, *source, *target_tree, init_T_target_source, setting);

Eigen::Isometry3d T = result.T_target_source;  // Estimated transformation
size_t num_inliers = result.num_inliers;       // Number of inlier source points
Eigen::Matrix<double, 6, 6> H = result.H;      // Final Hessian matrix (6x6)

Using PCL interface (02_basic_registration_pcl.cpp)

The PCL interface allows using small_gicp as a drop-in replacement for pcl::Registration. It is also possible to directly feed pcl::PointCloud to algorithms implemented in small_gicp.

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#include <small_gicp/pcl/pcl_registration.hpp>

pcl::PointCloud<pcl::PointXYZ>::Ptr raw_target = ...;
pcl::PointCloud<pcl::PointXYZ>::Ptr raw_source = ...;

// small_gicp::voxelgrid_downsampling can directly operate on pcl::PointCloud.
pcl::PointCloud<pcl::PointXYZ>::Ptr target = voxelgrid_sampling_omp(*raw_target, 0.25);
pcl::PointCloud<pcl::PointXYZ>::Ptr source = voxelgrid_sampling_omp(*raw_source, 0.25);

// RegistrationPCL is derived from pcl::Registration and has mostly the same interface as pcl::GeneralizedIterativeClosestPoint.
RegistrationPCL<pcl::PointXYZ, pcl::PointXYZ> reg;
reg.setNumThreads(4);
reg.setCorrespondenceRandomness(20);
reg.setMaxCorrespondenceDistance(1.0);
reg.setVoxelResolution(1.0);
reg.setRegistrationType("VGICP");  // or "GICP" (default = "GICP")

// Set input point clouds.
reg.setInputTarget(target);
reg.setInputSource(source);

// Align point clouds.
auto aligned = pcl::make_shared<pcl::PointCloud<pcl::PointXYZ>>();
reg.align(*aligned);

// Swap source and target and align again.
// This is useful when you want to re-use preprocessed point clouds for successive registrations (e.g., odometry estimation).
reg.swapSourceAndTarget();
reg.align(*aligned);

It is also possible to directly feed pcl::PointCloud to small_gicp::Registration. Because all preprocessed data are exposed in this way, you can easily re-use them to obtain the best efficiency.

#include <small_gicp/pcl/pcl_point.hpp>
#include <small_gicp/pcl/pcl_point_traits.hpp>

pcl::PointCloud<pcl::PointXYZ>::Ptr raw_target = ...;
pcl::PointCloud<pcl::PointXYZ>::Ptr raw_source = ...;

// Downsample points and convert them into pcl::PointCloud<pcl::PointCovariance>.
pcl::PointCloud<pcl::PointCovariance>::Ptr target = voxelgrid_sampling_omp<pcl::PointCloud<pcl::PointXYZ>, pcl::PointCloud<pcl::PointCovariance>>(*raw_target, 0.25);
pcl::PointCloud<pcl::PointCovariance>::Ptr source = voxelgrid_sampling_omp<pcl::PointCloud<pcl::PointXYZ>, pcl::PointCloud<pcl::PointCovariance>>(*raw_source, 0.25);

// Estimate covariances of points.
const int num_threads = 4;
const int num_neighbors = 20;
estimate_covariances_omp(*target, num_neighbors, num_threads);
estimate_covariances_omp(*source, num_neighbors, num_threads);

// Create KdTree for target and source.
auto target_tree = std::make_shared<KdTreeOMP<pcl::PointCloud<pcl::PointCovariance>>>(target, num_threads);
auto source_tree = std::make_shared<KdTreeOMP<pcl::PointCloud<pcl::PointCovariance>>>(source, num_threads);

Registration<GICPFactor, ParallelReductionOMP> registration;
registration.reduction.num_threads = num_threads;
registration.rejector.max_dist_sq = 1.0;

// Align point clouds. Note that the input point clouds are pcl::PointCloud<pcl::PointCovariance>.
auto result = registration.align(*target, *source, *target_tree, Eigen::Isometry3d::Identity());

Using Registration template (03_registration_template.cpp)

If you want to fine-control and customize the registration process, use small_gicp::Registration template that allows modifying the inner algorithms and parameters.

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#include <small_gicp/ann/kdtree_omp.hpp>
#include <small_gicp/points/point_cloud.hpp>
#include <small_gicp/factors/gicp_factor.hpp>
#include <small_gicp/util/normal_estimation_omp.hpp>
#include <small_gicp/registration/reduction_omp.hpp>
#include <small_gicp/registration/registration.hpp>

std::vector<Eigen::Vector3d> target_points = ...;   // Any of Eigen::Vector(3|4)(f|d) can be used
std::vector<Eigen::Vector3d> source_points = ...;   // 

int num_threads = 4;
double downsampling_resolution = 0.25;
int num_neighbors = 10;
double max_correspondence_distance = 1.0;

// Convert to small_gicp::PointCloud
auto target = std::make_shared<PointCloud>(target_points);
auto source = std::make_shared<PointCloud>(source_points);

// Downsampling
target = voxelgrid_sampling_omp(*target, downsampling_resolution, num_threads);
source = voxelgrid_sampling_omp(*source, downsampling_resolution, num_threads);

// Create KdTree
auto target_tree = std::make_shared<KdTreeOMP<PointCloud>>(target, num_threads);
auto source_tree = std::make_shared<KdTreeOMP<PointCloud>>(source, num_threads);

// Estimate point covariances
estimate_covariances_omp(*target, *target_tree, num_neighbors, num_threads);
estimate_covariances_omp(*source, *source_tree, num_neighbors, num_threads);

// GICP + OMP-based parallel reduction
Registration<GICPFactor, ParallelReductionOMP> registration;
registration.reduction.num_threads = num_threads;
registration.rejector.max_dist_sq = max_correspondence_distance * max_correspondence_distance;

// Align point clouds
Eigen::Isometry3d init_T_target_source = Eigen::Isometry3d::Identity();
auto result = registration.align(*target, *source, *target_tree, init_T_target_source);

Eigen::Isometry3d T = result.T_target_source;  // Estimated transformation
size_t num_inliers = result.num_inliers;       // Number of inlier source points
Eigen::Matrix<double, 6, 6> H = result.H;      // Final Hessian matrix (6x6)

See 03_registration_template.cpp for more detailed customization examples.

Cookbook

• Standard scan-to-scan GICP matching odometry
• Extremely scalable scan-to-scan matching odometry with data flow graph
• Scan-to-model matching odometry with incremental voxelmap (GICP + iVox)
• Scan-to-model matching odometry with incremental Gaussian voxelmap (VGICP)

Usage (Python) basic_registration.py

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Example A : Perform registration with numpy arrays

# Arguments
# - target_points               : Nx4 or Nx3 numpy array of the target point cloud
# - source_points               : Nx4 or Nx3 numpy array of the source point cloud
# Optional arguments
# - init_T_target_source        : Initial guess of the transformation matrix (4x4 numpy array)
# - registration_type           : Registration type ("ICP", "PLANE_ICP", "GICP", "VGICP")
# - voxel_resolution            : Voxel resolution for VGICP
# - downsampling_resolution     : Downsampling resolution
# - max_correspondence_distance : Maximum correspondence distance
# - num_threads                 : Number of threads
result = small_gicp.align(target_raw_numpy, source_raw_numpy, downsampling_resolution=0.25)

result.T_target_source  # Estimated transformation (4x4 numpy array)
result.converged        # If true, the optimization converged successfully
result.iterations       # Number of iterations the optimization took
result.num_inliers      # Number of inlier points
result.H                # Final Hessian matrix (6x6 matrix)
result.b                # Final information vector (6D vector)
result.e                # Final error (float)

Example B : Perform preprocessing and registration separately

# Preprocess point clouds
# Arguments
# - points                      : Nx4 or Nx3 numpy array of the target point cloud
# Optional arguments
# - downsampling_resolution     : Downsampling resolution
# - num_neighbors               : Number of neighbors for normal and covariance estimation
# - num_threads                 : Number of threads
target, target_tree = small_gicp.preprocess_points(target_raw_numpy, downsampling_resolution=0.25)
source, source_tree = small_gicp.preprocess_points(source_raw_numpy, downsampling_resolution=0.25)

# `target` and `source` are small_gicp.PointCloud with the following methods
target.size()           # Number of points
target.points()         # Nx4 numpy array   [x, y, z, 1] x N
target.normals()        # Nx4 numpy array   [nx, ny, nz, 0] x N
target.covs()           # Array of 4x4 covariance matrices

# Align point clouds
# Arguments
# - target                      : Target point cloud (small_gicp.PointCloud)
# - source                      : Source point cloud (small_gicp.PointCloud)
# - target_tree                 : KD-tree of the target point cloud (small_gicp.KdTree)
# Optional arguments
# - init_T_target_source        : Initial guess of the transformation matrix (4x4 numpy array)
# - max_correspondence_distance : Maximum correspondence distance
# - num_threads                 : Number of threads
result = small_gicp.align(target, source, target_tree)

Example C : Perform each of preprocessing steps one-by-one

# Convert numpy arrays (Nx3 or Nx4) to small_gicp.PointCloud
target_raw = small_gicp.PointCloud(target_raw_numpy)
source_raw = small_gicp.PointCloud(source_raw_numpy)

# Downsampling
target = small_gicp.voxelgrid_sampling(target_raw, 0.25)
source = small_gicp.voxelgrid_sampling(source_raw, 0.25)

# KdTree construction
target_tree = small_gicp.KdTree(target)
source_tree = small_gicp.KdTree(source)

# Estimate covariances
small_gicp.estimate_covariances(target, target_tree)
small_gicp.estimate_covariances(source, source_tree)

# Align point clouds
result = small_gicp.align(target, source, target_tree)

Example D: Example with Open3D

target_o3d = open3d.io.read_point_cloud('small_gicp/data/target.ply').paint_uniform_color([0, 1, 0])
source_o3d = open3d.io.read_point_cloud('small_gicp/data/source.ply').paint_uniform_color([0, 0, 1])

target, target_tree = small_gicp.preprocess_points(points_numpy=numpy.asarray(target_o3d.points), downsampling_resolution=0.25)
source, source_tree = small_gicp.preprocess_points(points_numpy=numpy.asarray(source_o3d.points), downsampling_resolution=0.25)
result = small_gicp.align(target, source, target_tree)

source_o3d.transform(result.T_target_source)
open3d.visualization.draw_geometries([target_o3d, source_o3d])

Benchmark

Processing speed comparison between small_gicp and Open3D (youtube).

Downsampling

• Single-threaded small_gicp::voxelgrid_sampling is about 1.3x faster than pcl::VoxelGrid.
• Multi-threaded small_gicp::voxelgrid_sampling_tbb (6 threads) is about 3.2x faster than pcl::VoxelGrid.
• small_gicp::voxelgrid_sampling gives accurate downsampling results (almost identical to those of pcl::VoxelGrid) while pcl::ApproximateVoxelGrid yields spurious points (up to 2x points).
• small_gicp::voxelgrid_sampling can process a larger point cloud with a fine voxel resolution compared to pcl::VoxelGrid (for a point cloud of 1000m width, the minimum voxel resolution can be 0.5 mm).

KdTree construction

• Multi-threaded implementation (TBB and OMP) can be up to 4x faster than the single-threaded one (All the implementations are based on nanoflann).
• The processing speed gets faster as the number of threads increases, but the speed gain is not monotonic sometimes (because of the scheduling algorithm or some CPU(AMD 5995WX)-specific issues?).
• This benchmark only compares the construction time (query time is not included).

Odometry estimation

• Single-thread small_gicp::GICP is about 2.4x and 1.9x faster than pcl::GICP and fast_gicp::GICP, respectively.
• small_gicp::(GICP|VGICP) shows a better multi-thread scalability compared to fast_gicp::(GICP|VGICP).
• small_gicp::GICP parallelized with TBB flow graph shows an excellent scalability to many-threads situations (~128 threads) but with latency degradation.
• Outputs of small_gicp::GICP are almost identical to those of fast_gicp::GICP.

License

This package is released under the MIT license.

If you find this package useful for your project, please consider leaving a comment here. It would help the author receive recognition in his organization and keep working on this project.

Contact

Kenji Koide, National Institute of Advanced Industrial Science and Technology (AIST)