Unified framework for Sequentially Markovian Coalescent methods
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smckit
Unified framework for Sequentially Markovian Coalescent methods.
PSMC, MSMC/MSMC2, SMC++ — one API, GPU-accelerated.
Preserve upstream algorithms now; grow native implementations over time.
Philosophy
smckit is upstream-first by design.
vendor/holds the original source or release artifacts that act as the oracle.implementation="upstream"means "run the original tool" when that bridge is wired and ready.implementation="native"means "run the in-repo implementation".implementation="auto"should prefer upstream fidelity whenever the upstream path is ready.
The repository now exposes smckit.upstream.status() and
smckit.upstream.bootstrap() so upstream readiness is inspectable rather than
implicit.
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