Spatial Model Editor
A GUI editor to create and edit spatial SBML models of bio-chemical reactions and simulate them using the dune-copasi solver for reaction-diffusion systems.
Getting started
To get started, download and run the GUI for your operating system
| Linux | MacOS Arm64 | Windows |
|---|---|---|
 |
 |
 |
Windows Arm64: spatial-model-editor-ARM64.exe
Or take a look at our website or the documentation
Pre-release binaries
Pre-release preview binaries are also available which are built from the main branch and can be used for testing new features before the next release:
Note: on linux some additional system libraries are required that may not be installed by default. To install them:
- Fedora/RHEL/CentOS:
sudo yum install xcb-util-image xcb-util-keysyms xcb-util-renderutil xcb-util-wm
Contributing
Bug reports and feature requests are very welcome, as are fixes or improvements to the documentation (to edit a page in the documentation, click the 'Edit on GitHub' button in the top right).
If you are interested in contributing code, please see the contributing guidelines.
Dependencies
Spatial Model Editor makes use of the following open source libraries:
-
dune-copasi - license: GPL2 + runtime exception
-
QCustomPlot - license: GPL
-
LLVM Core - license: Apache 2.0 License with LLVM exceptions
-
GNU Multiple Precision Arithmetic Library - license: LGPL
-
Computational Geometry Algorithms Library - license: GPL
-
oneTBB - license: Apache-2.0
-
Open Source Computer Vision Library - license: Apache-2.0
-
LibCombine - license: BSD
Licensing Note
The source code in this repository is released under the MIT license, which is a permissive GPL-compatible license.
The open source libraries that it uses are either also released under a permissive GPL-compatible license, or under a GPL license. As described in the gpl-faq, this means that the work as a whole is then licensed under the GPL.
The Linux and Windows binaries also statically link the CUDA redistributable libraries, which are redistributed in accordance with the NVIDIA CUDA Toolkit End User License Agreement (EULA)
2 maintainers
Release files for sme 1.12.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| sme-1.12.0.tar.gz | 23.4 MB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| sme-1.12.0-cp314-cp314t-win_arm64.whl | CPython 3.14 | CPython 3.14 free-threading | Windows ARM64 | Details |
| sme-1.12.0-cp314-cp314t-win_amd64.whl | CPython 3.14 | CPython 3.14 free-threading | Windows x86-64 | Details |
| sme-1.12.0-cp314-cp314t-manylinux_2_28_x86_64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux glibc 2.28+ x86-64 | Details |
| sme-1.12.0-cp314-cp314t-manylinux_2_28_aarch64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux glibc 2.28+ ARM64 | Details |
| sme-1.12.0-cp314-cp314t-macosx_13_0_arm64.whl | CPython 3.14 | CPython 3.14 free-threading | macOS 13.0+ ARM64 | Details |
| sme-1.12.0-cp314-cp314-win_arm64.whl | CPython 3.14 | CPython 3.14 | Windows ARM64 | Details |
| sme-1.12.0-cp314-cp314-win_amd64.whl | CPython 3.14 | CPython 3.14 | Windows x86-64 | Details |
| sme-1.12.0-cp314-cp314-manylinux_2_28_x86_64.whl | CPython 3.14 | CPython 3.14 | Linux glibc 2.28+ x86-64 | Details |
| sme-1.12.0-cp314-cp314-manylinux_2_28_aarch64.whl | CPython 3.14 | CPython 3.14 | Linux glibc 2.28+ ARM64 | Details |
| sme-1.12.0-cp314-cp314-macosx_13_0_arm64.whl | CPython 3.14 | CPython 3.14 | macOS 13.0+ ARM64 | Details |
| sme-1.12.0-cp313-cp313-win_arm64.whl | CPython 3.13 | CPython 3.13 | Windows ARM64 | Details |
| sme-1.12.0-cp313-cp313-win_amd64.whl | CPython 3.13 | CPython 3.13 | Windows x86-64 | Details |
| sme-1.12.0-cp313-cp313-manylinux_2_28_x86_64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.28+ x86-64 | Details |
| sme-1.12.0-cp313-cp313-manylinux_2_28_aarch64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.28+ ARM64 | Details |
| sme-1.12.0-cp313-cp313-macosx_13_0_arm64.whl | CPython 3.13 | CPython 3.13 | macOS 13.0+ ARM64 | Details |
| sme-1.12.0-cp312-cp312-win_arm64.whl | CPython 3.12 | CPython 3.12 | Windows ARM64 | Details |
| sme-1.12.0-cp312-cp312-win_amd64.whl | CPython 3.12 | CPython 3.12 | Windows x86-64 | Details |
| sme-1.12.0-cp312-cp312-manylinux_2_28_x86_64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.28+ x86-64 | Details |
| sme-1.12.0-cp312-cp312-manylinux_2_28_aarch64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.28+ ARM64 | Details |
| sme-1.12.0-cp312-cp312-macosx_13_0_arm64.whl | CPython 3.12 | CPython 3.12 | macOS 13.0+ ARM64 | Details |
| sme-1.12.0-cp311-cp311-win_arm64.whl | CPython 3.11 | CPython 3.11 | Windows ARM64 | Details |
| sme-1.12.0-cp311-cp311-win_amd64.whl | CPython 3.11 | CPython 3.11 | Windows x86-64 | Details |
| sme-1.12.0-cp311-cp311-manylinux_2_28_x86_64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.28+ x86-64 | Details |
| sme-1.12.0-cp311-cp311-manylinux_2_28_aarch64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.28+ ARM64 | Details |
| sme-1.12.0-cp311-cp311-macosx_13_0_arm64.whl | CPython 3.11 | CPython 3.11 | macOS 13.0+ ARM64 | Details |
| sme-1.12.0-cp310-cp310-win_arm64.whl | CPython 3.10 | CPython 3.10 | Windows ARM64 | Details |
| sme-1.12.0-cp310-cp310-win_amd64.whl | CPython 3.10 | CPython 3.10 | Windows x86-64 | Details |
| sme-1.12.0-cp310-cp310-manylinux_2_28_x86_64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.28+ x86-64 | Details |
| sme-1.12.0-cp310-cp310-manylinux_2_28_aarch64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.28+ ARM64 | Details |
| sme-1.12.0-cp310-cp310-macosx_13_0_arm64.whl | CPython 3.10 | CPython 3.10 | macOS 13.0+ ARM64 | Details |
| sme-1.12.0-cp39-cp39-win_arm64.whl | CPython 3.9 | CPython 3.9 | Windows ARM64 | Details |
| sme-1.12.0-cp39-cp39-win_amd64.whl | CPython 3.9 | CPython 3.9 | Windows x86-64 | Details |
| sme-1.12.0-cp39-cp39-manylinux_2_28_x86_64.whl | CPython 3.9 | CPython 3.9 | Linux glibc 2.28+ x86-64 | Details |
| sme-1.12.0-cp39-cp39-manylinux_2_28_aarch64.whl | CPython 3.9 | CPython 3.9 | Linux glibc 2.28+ ARM64 | Details |
| sme-1.12.0-cp39-cp39-macosx_13_0_arm64.whl | CPython 3.9 | CPython 3.9 | macOS 13.0+ ARM64 | Details |
Total release size: 2.2 GB
Release files / sme-1.12.0.tar.gz
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|---|---|
| Size | 23.4 MB |
| Tags | Source |
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| Tags | CPython 3.14 CPython 3.14 free-threading macOS 13.0+ ARM64 |
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PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Apr 22, 2026.
Transparency log
