Species METabolic interaction ANAlysis (SMETANA) is a python-based command line tool to analyse microbial communities.
Project description
SMETANA
Species METabolic interaction ANAlysis (SMETANA) is a python-based command line tool to analyse microbial communities.
It takes as input a microbial communtity (from a collection of genome-scale metabolic models in SBML format) and computes of several metrics that describe the potential for cross-feeding interactions between community members.
Documentation
For more details please check: http://smetana.readthedocs.io/
Installation
Can be easily installed using pip:
pip install smetana
Citing SMETANA:
The algorithms here implemented have been previously described in: Zelezniak et al, PNAS (2015).
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
| Filename, size | File type | Python version | Upload date | Hashes |
|---|---|---|---|---|
| Filename, size smetana-1.2.0-py3-none-any.whl (15.0 kB) | File type Wheel | Python version py3 | Upload date | Hashes View hashes |
| Filename, size smetana-1.2.0.tar.gz (135.2 kB) | File type Source | Python version None | Upload date | Hashes View hashes |
