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Deprecation:

The version 2.0.0 of the generic snakemake plugin for slurm lets the user dynamically define partitions according to resources. This plugin is now obsolete. Please use the official snakemake plugin.

Snakemake executor plugin: slurm-gustave-roussy

Snakemake plugin executor designed to match Gustave Roussy computing cluster specificities : automatic partition seleciton, and default resources value.

Checkout the profile given on the cluster to automatically activate this executor with your pipeline:

snakemake --profile /mnt/beegfs/pipelines/unofficial-snakemake-wrappers/profiles/slurm-web ...

For documentation, see the Snakemake plugin catalog.

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