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  • License: MIT License (MIT)
  • Author: tdayris
  • Tags snakemake , plugin , executor , cluster , slurm , gustave-roussy
  • Requires: Python <4.0, >=3.11
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Snakemake executor plugin: slurm-gustave-roussy

Snakemake plugin executor designed to match Gustave Roussy computing cluster specificities : automatic partition seleciton, and default resources value.

Checkout the profile given on the cluster to automatically activate this executor with your pipeline:

snakemake --profile /mnt/beegfs/pipelines/unofficial-snakemake-wrappers/profiles/slurm-web ...

For documentation, see the Snakemake plugin catalog.

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  • License: MIT License (MIT)
  • Author: tdayris
  • Tags snakemake , plugin , executor , cluster , slurm , gustave-roussy
  • Requires: Python <4.0, >=3.11
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