snakemakehelpers 0.0.3

A bundle of snakemake helper functions.

snakemakehelpers

Meant to work with poetry and snakemake.

Installation

Add to an initialized (via poetry init) poetry project from PyPI via poetry add snakemakehelpers.

usage

Run poetry run snakemake-interact from a directory with a snakefile to interact with snakemake.

Current options to interact are:

• Process latest snakemake log file:

  Searches the .snakemake/log directory for log files and parses the most recent one.

• Select target(s) to make (poetry run snakemake -Fn):

  Generates a list of possible output files via poetry run snakemake -Fn, from which the user can choose one or more to make.

• Make target(s) ( poetry run snakemake ... -c):

  Makes user provided targets.

• Inspect selected snakemake log file (...):

  Inspects the selected log file using less.

• Select a different snakemake log file:

  Select another log file from .snakemake/log to process.

• Print internal state of this program