snakemk-util 2.0.0

utility functions for snakemake

Snakemake utils

Utility functions for snakemake

Examples

Loading snakemake object without actually running snakemake

try:
    snakemake
except NameError:
    from snakemk_util import load_rule_args
    
    snakefile_path = os.getcwd() + "/Snakefile"
    snakemake = load_rule_args(
        snakefile = snakefile_path,
        rule_name = 'create_prediction_target',
        default_wildcards={
            'ds_dir': 'all_data'
        }
    )

Installation

pip install snakemk_util