snapgene-utils 0.4.0

Convert Snapgene *.dna files dict/json/biopython.

SnapGene Utils is a Python library to parse Snapgene *.dna files into dictionaries or Biopython SeqRecords:

from snapgene_utils import snapgene_file_to_dict, snapgene_file_to_seqrecord

file_path = './snap_gene_file.dna'
dictionary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)

Installation

Install with PIP:

pip install snapgene_utils

Test with Pytest:

pytest --cov=snapgene_utils tests/

Development

python3 -m venv venv
source venv/bin/activate
pip install -e .
pip install -r requirements_dev.txt

## Run tests
./venv/bin/pytest tests/

## Distribute
## Make sure credentials are stored under ~/.pypirc
git tag <version>
git push origin --tags
python -m build
twine upload --repository pypi dist/*

Licence = MIT

SnapGene Utils is an open-source software originally written by Isaac Luo at the Cai Lab. This fork is released under the MIT licence. Everyone is welcome to contribute!