snapshooter 1.0.18

Provides a set of utilities for comparing and backing up data on different filesystems

Snapshooter (fsspec folder backup and restore tooling)

Snapshooter is a tool to back up and restore a folder in a fsspec file system. It is designed to be used with the fsspec file system library, which provides a unified interface to various file systems (e.g. local, azure, s3, ...).

Key features:

• Backup side is decomposed into two parts: The snapshots and the heap
  • Snapshots: The snapshots store the files information as provided by the fsspec file system, with the following transformations:
    • The metadata object is jsonified
    • The file name of each file is changed to be relative to the src_root folder
    • An additional md5 field is added, containing the md5 hash of the file contents. This allows for efficient diffing of files.
  • Heap: The heap folder stores the file contents into file with the md5 hash of the file as the file name. This allows for efficient deduplication of files.
• Efficient incremental backups: Only files that are unknown are copied to the heap file system.

Installation

pip install snapshooter

Usage with CLI

make a snapshot

snapshooter \
  --file-root tests/unit_test_data/sample_src \
  --heap-root tests/temp/sample_heap \
  --snap-root tests/temp/sample_snap \
  make-snapshot

restore the latest snapshot

snapshooter \
  --file-root tests/unit_test_data/restored_src \
  --heap-root tests/temp/sample_heap \
  --snap-root tests/temp/sample_snap \
  restore-snapshot

restore the latest snapshot before or at a given timestamp

snapshooter \
  --file-root tests/unit_test_data/restored_src \
  --heap-root tests/temp/sample_heap \
  --snap-root tests/temp/sample_snap \
  restore-snapshot \
  --latest 2021-09-01T00:00:00  

restore a specific snapshot

snapshooter \
  --file-root tests/unit_test_data/restored_src \
  --heap-root tests/temp/sample_heap \
  --snap-root tests/temp/sample_snap \
  restore-snapshot \
  --path tests/temp/sample_snap/2024/04/2024-04-10_14-30-40_086601Z.jsonl.gz  

list snapshots

snapshooter \
  --file-root tests/unit_test_data/restored_src \
  --heap-root tests/temp/sample_heap \
  --snap-root tests/temp/sample_snap \
  list-snapshots

compare snapshots

snapshooter \
  --file-root tests/unit_test_data/sample_src \
  --heap-root tests/temp/sample_heap \
  --snap-root tests/temp/sample_snap \
  compare-snapshots \
  --path1 tests/temp/sample_snap/2024/04/2024-04-10_14-30-40_086601Z.jsonl.gz \

Snapshot can be identified by the options path1, latest1, path2, latest2, in the same way as in the command restore-snapshot.

support for storage options (e.g. to pass credentials)

Example: Azure file system, See accepted syntax directly in the adlfs documentation: https://pypi.org/project/adlfs/.

az login
snapshooter \
  --file-root az://file-container/file-root \
  --heap-root az://heap-container/heap-root \
  --snap-root az://snap-container/snap-root \
  --file-storage-options '{"account_name": "fileaccountname"}' \
  --heap-storage-options '{"account_name": "heapaccountname"}' \
  --snap-storage-options '{"account_name": "snapaccountname"}' \
  make-snapshot

Usage with Python

See the CLI implementation here for an example of how to use the Snapshooter class.

Supported file systems

The current version has been developed and tested with local and azure file systems.

For other file systems: a single function needs to be implemented and added to the md5_getter_by_fs_protocol dictionary in fsspec_utils.py. This function takes as input the current metadata of a file and the latest snapshot and should return the md5 hash of the file contents if it can be retrieved without downloading the file. If the md5 hash cannot be retrieved, the function should return None and the file will be downloaded.

Pull requests are welcome.