Similarity Network Fusion (SNF)

SNF python implementation with intention to be 1-2 with MatlabV 2.1

Reference:

B Wang, A Mezlini, F Demir, M Fiume, T Zu, M Brudno, B Haibe-Kains, A Goldenberg (2014) Similarity Network Fusion: a fast and effective method to aggregate multiple data types on a genome wide scale. Nature Methods. Online. Jan 26, 2014

Usage

Install from pypi:

pip install snf_simple

Using the module

You can see an example usage under demo

Development

The project is using poetry for reliable development.

See poetry documentation on how to install the latest version for your system:

https://python-poetry.org/docs

Setup

After installing poetry, start an environment:

poetry install

If you are using PyCharm you can use this plugin for setting up interpreter.

Testing

Tests are using standard pytest format. You can run them after the setup with:

pytest