snt-malaria-budgeting 0.9.0

A Python library for calculating malaria intervention budgets

SNT Malaria Budgeting

A Python library for calculating malaria intervention budgets across different countries and time periods.

Installation

Install from PyPI:

pip install snt-malaria-budgeting

Development Installation

For development, clone the repository and install with development dependencies:

pip install -e .[dev]

This installs the package in editable mode along with all development tools (pytest, ruff, mypy, etc.).

Example usage

To fetch budgets for a given country and years:

from snt_malaria_budgeting.core.budget_calculator import get_budget
from snt_malaria_budgeting.models import (
    DEFAULT_COST_ASSUMPTIONS,
    InterventionDetailModel,
)

start_year = 2025
end_year = 2027
# places are a list of ids
interventions = [InterventionDetailModel(code="iptp", type="SP", places=[1001])]
settings = DEFAULT_COST_ASSUMPTIONS

budgets = []
budget_calculator = BudgetCalculator(
    interventions_input=interventions_input,
    settings=settings,
    cost_df=cost_df, # refer to unit tests for an example
    population_df=population_df, # refer to unit tests for an example
    local_currency="EUR",
    spatial_planning_unit="key",
    cost_overrides=[], # optional
    unknown_intervention_handling="ignore", #optional can be: ignore, handle or error

)

for year in range(start_year, end_year + 1):
    print(f"Fetching budget for year: {year}")
    interventions_costs = budget_calculator.get_interventions_costs(year)
    places_costs = budget_calculator.get_places_costs(year)
    budgets.append({
        "year": year,
        "interventions": interventions_costs,
        "org_units_costs": places_costs
    })

print(budgets)

Input Definitions

1. interventions_input (List of InterventionDetailModel)

• code: Intervention code (e.g., "iptp", "smc", etc.)
• type: Unique identifier for the intervention within a code (e.g., "SP", "SP+AQ")
• places: List of place IDs assigned to the intervention
• target_population_columns: (Optional) List of population columns to use for quantification (e.g., ["pop_total"], ["pop_0_5", "pop_pw"])

Default Target Population & Required Cost Units by Intervention:

Intervention Code	Default Target Population Column(s)	Required Cost Unit(s)
itn_campaign	pop_total	per ITN, per bale
itn_routine	pop_0_5, pop_pw	per ITN
iptp	pop_pw	per SP
smc	pop_0_5	per SPAQ pack 3-11 month olds, per SPAQ pack 12-59 month olds
pmc	pop_0_1, pop_1_2	per SP
vacc	pop_vaccine_5_36_months	per dose, per child
default	pop_total	Other

Note:

• The unit column in your cost_df must match the required cost unit(s) for each intervention code above.
• Some interventions (like SMC and Vacc) require multiple units for different age groups or quantification types.

2. settings (Dictionary)

Dictionary of cost and quantification assumptions. Defaults are provided in DEFAULT_COST_ASSUMPTIONS (see models.py).

3. cost_df (DataFrame)

DataFrame of unit costs, with columns such as:

• code_intervention
• type_intervention
• cost_class
• unit
• ngn_cost
• usd_cost
• cost_year

4. population_df (DataFrame)

DataFrame with population data by place and year, with columns:

• org_unit_id: Place ID
• year: Year
• Population columns: e.g., pop_total, pop_0_5, pop_pw, etc.

If target_population_columns is not specified in the intervention, the default columns above are used.

5. local_currency (str)

The local currency symbol (e.g., "NGN", "EUR").

6. spatial_planning_unit (str)

The column name in population_df that identifies the spatial unit (e.g., "org_unit_id").

7. budget_currency (str, optional)

The currency for the budget output. Defaults to local_currency.

8. cost_overrides (Optional[List[CostItems]])

List of cost override items (see CostItems model).

9. unknown_intervention_handling (str, optional)

How to handle unknown interventions: "ignore", "handle", or "error".

Development

Running Tests

After installing with development dependencies, run the test suite:

pytest
pytest -v # verbose output
pytest --cov=snt_malaria_budgeting --cov-report=html # with coverage report

# specific test files or methods:
pytest tests/core/test_budget_calculator.py
pytest tests/core/test_budget_calculator.py::TestGetBudget::test_get_budget_iptp

Acknowledgements

This library is a Python port of the PATH Budget Generation Function (R implementation).