so4gp 0.7.3

Some Python optimization algorithms for mining gradual patterns.

SO4GP stands for: "Some Optimizations for Gradual Patterns". SO4GP applies optimizations such as swarm intelligence, HDF5 chunks, cluster analysis and many others in order to improve the efficiency of extracting gradual patterns. It provides Python algorithm implementations for these optimization techniques. The algorithm implementations include:

• (Classical) GRAANK algorithm for extracting GPs
• Ant Colony Optimization algorithm for extracting GPs
• Genetic Algorithm for extracting GPs
• Particle Swarm Optimization algorithm for extracting GPs
• Random Search algorithm for extracting GPs
• Local Search algorithm for extracting GPs
• Clustering-based algorithm for extracting GPs

A GP (Gradual Pattern) is a set of gradual items (GI) and its quality is measured by its computed support value. For example given a data set with 3 columns (age, salary, cars) and 10 objects. A GP may take the form: {age+, salary-} with a support of 0.8. This implies that 8 out of 10 objects have the values of column age 'increasing' and column 'salary' decreasing.

Installation

pip install so4gp

Usage

In order to any algorithm for the purpose of extracting GPs, follow the instructions that follow.

First and foremost, import the so4gp python package via:

import so4gp as sgp

GRAdual rANKing Algorithm for GPs (GRAANK)

This is the classical approach (initially proposed by Anne Laurent) for mining gradual patterns. All the remaining algorithms are variants of this algorithm.

import pandas as pd
import so4gp as sgp

dummy_data = [["2021-03", 30, 3, 1, 10], ["2021-04", 35, 2, 2, 8], ["2021-05", 40, 4, 2, 7], ["2021-06", 50, 1, 1, 6], ["2021-07", 52, 7, 1, 2]]
dummy_df = pd.DataFrame(dummy_data, columns=['Date', 'Age', 'Salary', 'Cars', 'Expenses'])
    
mine_obj = sgp.algorithms.GRAANK(data_source=dummy_df, min_sup=0.5, eq=False)
gp_json = mine_obj.discover()
print(gp_json)

where you specify the parameters as follows:

• data_source - [required] data source {either a file in csv format or a Pandas DataFrame}
• min_sup - [optional] minimum support default = 0.5
• eq - [optional] encode equal values as gradual default = False

Sample Output

The default output is the format of JSON:

{
	"Algorithm": "RS-GRAANK",
	"Best Patterns": [
            [["Age+", "Salary+"], 0.6], 
            [["Expenses-", "Age+", "Salary+"], 0.6]
	],
	"Iterations": 20
}

References

• Owuor, D., Runkler T., Laurent A., Menya E., Orero J (2021), Ant Colony Optimization for Mining Gradual Patterns. International Journal of Machine Learning and Cybernetics. https://doi.org/10.1007/s13042-021-01390-w
• Dickson Owuor, Anne Laurent, and Joseph Orero (2019). Mining Fuzzy-temporal Gradual Patterns. In the proceedings of the 2019 IEEE International Conference on Fuzzy Systems (FuzzIEEE). IEEE. https://doi.org/10.1109/FUZZ-IEEE.2019.8858883.
• Laurent A., Lesot MJ., Rifqi M. (2009) GRAANK: Exploiting Rank Correlations for Extracting Gradual Itemsets. In: Andreasen T., Yager R.R., Bulskov H., Christiansen H., Larsen H.L. (eds) Flexible Query Answering Systems. FQAS 2009. Lecture Notes in Computer Science, vol 5822. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-04957-6_33

See Docs for more details