societal-costs-rscripts-publication-plots 0.1.0

Bundle and unpack the societal_costs_r project files

Societal Costs R Bundle

This repository develops the societal_costs_r R project and ships it through a small Python wheel wrapper. The Python package exists only because the remote Windows host accepts packages from its PyPI mirror but does not allow pasting or normal file transfer.

The source of truth for the R code is the top-level r_project/ directory. During wheel builds, that project is embedded as societal_costs_r_bundle/r_project/ so the installed unpack command can copy it onto the remote host.

Repository Layout

• r_project/R/: R helper functions used by the pipeline.
• r_project/scripts/: stage scripts and the interactive runner.
• r_project/tests/: local R contract tests, not included in the wheel.
• src/societal_costs_r_bundle/: Python unpack wrapper.
• tests/: Python tests for the wrapper.

Included Files

• R/
• scripts/
• HFAUDD.json
• AUDD_HOVED_E_L1L5_K.txt
• README.md

Usage

unpack /target/path

The command copies the bundled project files into the exact path you provide and fails if that path already exists. Generated outputs, local R tests, and docs are intentionally not copied into the unpacked runtime project.

Inside the unpacked R project, scripts/99_run_all_interactive.R is the main entry point for interactive production runs. On Windows it defaults to the standard production roots for intermediate_root, the flat cost-register delivery, POPC, and indberetningmedpris.parquet. Outputs are written in a structured output/ tree by default, with logs under output/logs/ and model diagnostics under output/analysis/model_diagnostics.csv.

Release Checks

Run the local checks before building:

just release-check

Or run the steps individually:

just r-test
just py-test
uv build

Inspect the wheel before publishing:

unzip -l dist/*.whl

The wheel should include r_project/R/, r_project/scripts/, r_project/HFAUDD.json, r_project/AUDD_HOVED_E_L1L5_K.txt, and r_project/README.md; it should not include r_project/output/.