A simple python package for doublet detection in scRNA-seq data
Project description
SoCube
Introduction
SoCube is an end-to-end doublet detection tool with novel feature embedding strategy. User manual is published on this repo's github page.
Installment
You can just install socube by executing pip command.
pip install socube
For install detail, please see at user manual.
Usage
The basic usage of socube with gpus is as follows.
socube -i data/pbmc-1C-dm.h5ad --gpu-ids 0
Please visit our user manual for usage detail.
Help
Any problem, you could create an issue, we will receive an email sent by github and reply it as soon as possible.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file socube-1.1.tar.gz.
File metadata
- Download URL: socube-1.1.tar.gz
- Upload date:
- Size: 46.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.9.15
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
5b16f8de422e05579762909ba038c8bd89fceb7c9417f625a6b430de2e8e5caa
|
|
| MD5 |
7d2a0f040d75c2391f56f5c22930954e
|
|
| BLAKE2b-256 |
de45c3d89204256570eb1b2c55c2d48cf805f5bef9860664acaab8319fb3c5f3
|
File details
Details for the file socube-1.1-py3-none-any.whl.
File metadata
- Download URL: socube-1.1-py3-none-any.whl
- Upload date:
- Size: 69.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.9.15
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
98352bb1e0b6980727f34ab74c5e2833db6909422bfbc4960bf5d7db4275b296
|
|
| MD5 |
af85bb6171535eb7db787cee4823b315
|
|
| BLAKE2b-256 |
0ce4110f204e09235d57f758962097f8598ed79a84c09132f62fba29e70a9e6e
|
